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AT4G14390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14400.1); Has 23458 Blast hits to 11336 proteins in 519 species: Archae - 46; Bacteria - 1569; Metazoa - 13305; Fungi - 1747; Plants - 2323; Viruses - 62; Other Eukaryotes - 4406 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:CP002687EnsemblPlants:AT4G14390
EnsemblPlants:AT4G14390.1entrez:827084Gene3D:1.25.40.20GeneID:827084
GO:GO:0016021GO:GO:0031347GO:GO:0071446GO:GO:2000031
Gramene:AT4G14390.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF52InParanoid:F4JVF4
InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961InterPro:IPR032846
iPTMnet:F4JVF4KEGG:ath:AT4G14390ncoils:CoilPANTHER:PTHR24177:SF52
PaxDb:F4JVF4Pfam:PF12796Pfam:PF13962Pfscan:PS50088
Pfscan:PS50297PRIDE:F4JVF4PROSITE:PS50088PROSITE:PS50297
ProteinModelPortal:F4JVF4Proteomes:UP000006548RefSeq:NP_193175.2SMART:SM00248
SMR:F4JVF4STRING:3702.AT4G14390.1SUPFAM:SSF48403TAIR:AT4G14390
TMHMM:TMhelixUniGene:At.54317UniProt:F4JVF4
Coordinates (TAIR10) chr4:+:8289644..8292083
Molecular Weight (calculated) 76714.30 Da
IEP (calculated) 7.21
GRAVY (calculated) 0.18
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MDELFVSISS TFSKTSCITD LLLPLELDRI EAQRSTDASH DQQNRTYLPM NIHGSQDFSQ SGGDGVTPLT GDTESVPEFL TNLRLSDLYA IRGEDVRMIP
101: EVFSKISDGN KECLEKLRSR GISVARIKSN TGDSILHLAV TWGHLELVKE IVCECPRLLL EQNSSGQTPL HVAAHSGHTT IVEAFVALVT FSSARLCNEE
201: SERMNPYVLK DKDGNTALYY AIEGRYFEMA VCLVNANQDA PFLGNKYGVS SLFVAINTGD VSLVKAILKI IGNKDLKGKK SNLESKLQGQ KSLAHVALVT
301: QSIAGVLDVI LDEYPSLMDE RDINGWTCLS LAAHIGYYEG VCNLLERSTK GVYVCDQDGS FPIHTAAEKG HENIVEEFIK RCPGSKHLLN KLGQNVLHIA
401: AKNGKFWISN MLIINKDTEH LGVGQDVDGN TPLHLAVMNW HFKSITWLAR SSKILKVRNK NGLRARDIAE REVKPHYIFQ ERWTLALLLY AIHSRGFESV
501: HSLTKPSVPL DPKNNRDYVN TLLLVAALVA TMTFAAGFTI PGGFNSSAPH LGRATLATNP TLFIFLVLDI LAMQSSVATI GILIWAQLGD PVLIRSSLHV
601: ALPLLLFALL CMPLAFLFGV VTAVGHVKWL VVIICIISVL FFSWAIFVLG PHVMLQRSYV SPKYAGDFLV TFMQYKDIIG LFVSLIKFLF CGCY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)