AT2G21850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.371 nucleus 0.305 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G21840.1); Has 3136 Blast hits to 713 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 4; Plants - 2976; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9315268..9317908 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90071.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 787 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAELKHFSHE CPLTSPKIAV DGICSICYKD DLVELACSPC DFSLCKGCSQ LPQKVWHDFH PDHPLEFCLH QYDQKPEHVV CSGCGNMTSG SFYKCKECEI 101: YLDMGCALIA SIFRGWDSKD LLHYSHCHLL KRCRPGPDAR GSCLLCELPL SPSSVCYGCV HCYSFVHERC IHFPREIAHP VHLAHPLKRL DYTRTSLCHI 201: CGESIAGVPF GCLECDFDAH LRCLDSFLRG LMHKSHPHRL IYRTKSHISF TENDQCQICR RSIVISLDSF FYCIQCSMVF HFECLEIPEF VVEKSHHIHP 301: LVCKFLPYED EFLEYCGVCE TMVYAGHHAY SCDECDFLGH IECILRKAAP SPLYLKDLYP CSKDNTSSTY QLDHDTNEPK AELMVNTMKG HIHVMRFVDF 401: RELDEKAKCN ICRTKIRGSP CKCETCSFQA HSFCAELGRP LKHRVHKHFL TLLPDAPAGT DVTMNCDICR DDIKGFNLFC RICNFVIHTN CIFRGKHLFT 501: ESQRGQKIIG SCTAMSGCIQ KEHLLDQIMV SKSYSMACDI CEEVVCGKDK TIHMSSLRLS TFVYRLINES SLVSCVVCKD VYHPLCLEVN RQMRFCHPIH 601: PDHYLPLSFV SGSKCLACKL EIKKYGYHCS TCNISFHIKC SKAVIFPQQT SHNHRFYHFW IADSKITRTC RVCAKPCGVS FYGCIGCDFN AHAECIAFPD 701: NVKNQKHEHT LKLIGSRYFE PDCFLCGERI VGKFGKSSNV LYSCKHCGKE FHLKCIMSTD DREAATEEDQ YGDIYLMYLE RHLLEVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)