AT2G21830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.872 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G21850.1); Has 2141 Blast hits to 715 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 4; Plants - 2011; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9303821..9305700 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65593.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKLEHFSHS CPLTSPEIVA EGICNICFQD QVVEYACKPC NFDICKTCSK LPQKVSHGFH SDHPLEFSLF QYDRKPGYIV CSCCGNMSSC SFYECKECEI 101: YLDLGCALLK NVFTGWDVRE MLHYSHEHLL RRCKPGQDAR GSCLLCELPL SPSSICYGCV YCYSFLHERC LDLPTEIRHP VHLEHPLRRL DYIRSGGRTF 201: CGACREKIDS VPFGCLECGF YIHMRCADSF LRCLMHESHE HKLFYVSSNA KEHFGRNNCC QICLGAVVSS LDSYYHCIEC ELEFHFECLG ISKTISKRSC 301: HIHPLVCKRV REEDDSLEYC GVCETLIHAG HHVYSCEECD FLGHIECILR EKEPSPLYLK DLYSCVEDVK RATNQEDYET NKVMVHDINH NHVVTSIDMC 401: ELEGKEHCHI CEKEILGNPW KCETCNFVTH NFCVELGKPS RHRFHWNHLL TLMPKPVATD MTSCKSCRED IKGFNLFCRI CNFIIHVSCA MKGKRFLGMT 501: GPKVVGTWRG RCLGGKHRMV QVMFPRSYQK VCIICHERVL GKAVSCMECE TIYHLRCIDR HRIKDRDSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)