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AT1G65320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G53750.1); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQNBeggNOG:ENOG410Y9FWEMBL:AC004512EMBL:AK117112
EMBL:CP002684EnsemblPlants:AT1G65320EnsemblPlants:AT1G65320.1entrez:842840
GeneID:842840GO:GO:0005773GO:GO:0005774GO:GO:0016021
Gramene:AT1G65320.1hmmpanther:PTHR13780hmmpanther:PTHR13780:SF46HOGENOM:HOG000238614
InParanoid:Q8GZA4InterPro:IPR000644iPTMnet:Q8GZA4KEGG:ath:AT1G65320
OMA:ECGIPVWPaxDb:Q8GZA4Pfam:PF00571Pfam:Q8GZA4
Pfscan:PS51371PhylomeDB:Q8GZA4PIR:T02355PRIDE:Q8GZA4
PRO:PR:Q8GZA4PROSITE:PS51371ProteinModelPortal:Q8GZA4Proteomes:UP000006548
RefSeq:NP_176711.1STRING:3702.AT1G65320.1SUPFAM:SSF54631TAIR:AT1G65320
UniGene:At.35899UniGene:At.67954UniProt:Q8GZA4
Coordinates (TAIR10) chr1:-:24260168..24262644
Molecular Weight (calculated) 46557.60 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.13
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)