AT3G27020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YELLOW STRIPE like 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana metal-nicotianamine transporter YSL6 | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 6 (YSL6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 4 (TAIR:AT5G41000.1); Has 1640 Blast hits to 1588 proteins in 511 species: Archae - 21; Bacteria - 808; Metazoa - 0; Fungi - 241; Plants - 449; Viruses - 1; Other Eukaryotes - 120 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9961623..9964461 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73577.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.60 | ||||||||||||||||||||||||||||||||||||||||
| Length | 676 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTEIPRSAE ISEALLPPES EKTVTATEEH VPEWKEQITI RGLTVSALLG TLFCIITHKL NLTVGIIPSL NVAAGLLGFF FVKSWTGFLS KLGFTVKPFT 101: KQENTVIQTC VVACYGLAFS GGFGSYLIAM DEKTYKLIGA DYPGNHAEDV INPGLWWMIG FLFVVSFLGL FSLVPLRKVM VLDYKLTYPS GTATAMLINS 201: FHTNTGAELA GNQVKCLGKY LSLSLIWSCF KWFFSGIGDA CGFDNFPTLG LTLFKNTFYF DFSPTYIGCG LICPHIVNCS VLLGAIISWG ILWPFVSQHA 301: GDWYPADLGS NDFKGLYGYK VFIAIAIILG DGLYNLVKII AVTVKELCSS RSRRLNLPIV TDGVDDSEAS EILLVKKKRD EVFLKDRIPL EFAIAGYVGL 401: AAISTATIPI IFPPLKWYFV LCSYFIAPAL AFCNSYGTGL TDWSLASTYG KIGLFIIASV VGSDGGVIAG LAACGVMMSI VSTAADLMQD FKTGYLTLSS 501: AKSMFVSQLV GTAMGCVIAP LTFWLFWTAF DIGDPNGPYK APYAVIFREM AILGIEGFAE LPKHCLALCY GFFIAALIVN LLRDITPPKI SQFIPIPMAM 601: AVPFYIGAYF AIDMFVGTVI LFVWERINRK DAEDFAGAVA SGLICGDGIW TIPSAILSIL RINPPICMYF GPSSAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)