AT5G45500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18432636..18434951 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87700.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 771 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSGTQPEGL QAAQPAGLQA AGLQAAQPAG LQAAQPAGLQ AAGKRKPPTT TEDPNDPQHI IHDFLTIVNK LEKEVDLPGA ITRARTYDAE VDGLITADQP 101: QTNLGRAESA PIPNAKPEGP DDHHIPKLQR NLRLLKEDVA KLQYLRSEVA EEVWKHIRPL ELLLENVAKE QKKNPTKPPL TLGMKKDLDD INKKIFNLMC 201: QVPLLPNKRK KAKGLDDDDG DGDNNNGKGI VCLPGIHANK ADLRSRAVFR YVLREFEELS DQRKICLLTF AVFPENQEVN RTMLMYWWMG EGILSTKDIS 301: SQEGTEEVIL KPEDVVKVIL KDFTDRNLIE PVEIKRKVEP SSYKMAPFVH ASVVLISKEI GLFDMYDIKD KPVMKKSGMH KVCLVEGSSS QQEAKAKKME 401: DVDHIETVFN VSERFPDFTF KWFSEDKPTR NKLTLSKVTY QKLKVFYLGR WERTAKRHIE VENPELMKNL KRMIKLKLLS FQGISRIERL DDAVCKLRDL 501: IILDLRACYN LEKLPDKIDS LKALIYLDIT DCYMIDRMPK RLSWLDNLEV LKGFVVSDAT DEETVCTLAE LVHLKKLRKL SISINKENFS IDDVFVAVKS 601: FKKLEKLKVA WGGINTHPQG KGVDSEKGDE NVKPKENIGI LERAATMFRK EKDPTAPELP KTLKKLDLQC FPGEHLPEWL EPDNLLNVEK LYIKGGIKLT 701: GFGKSLPSQN SKCKVTVLRL KFLPKLKVEW RDLSKRYFPE LKFLEKYQCP QVSLCPCDGI GIWRKPEEDE V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)