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AT5G45510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: defense response; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G19050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19836eggNOG:COG4886eggNOG:ENOG410J0Z0EMBL:AB018113
EMBL:AK316919EMBL:AY065063EMBL:CP002688EnsemblPlants:AT5G45510
EnsemblPlants:AT5G45510.1entrez:834587ExpressionAtlas:Q8VZC7Gene3D:3.80.10.10
GeneID:834587Genevisible:Q8VZC7GO:GO:0005524GO:GO:0005829
GO:GO:0005886GO:GO:0006952hmmpanther:PTHR23155hmmpanther:PTHR23155:SF577
HOGENOM:HOG000090532InParanoid:Q8VZC7InterPro:IPR032675iPTMnet:Q8VZC7
KEGG:ath:AT5G45510ncoils:CoilOMA:DFFEHCGPaxDb:Q8VZC7
Pfam:Q8VZC7PRIDE:Q8VZC7PRO:PR:Q8VZC7ProteinModelPortal:Q8VZC7
Proteomes:UP000006548RefSeq:NP_001078719.1RefSeq:NP_199364.2SMR:Q8VZC7
STRING:3702.AT5G45510.1SUPFAM:SSF52058TAIR:AT5G45510UniGene:At.22832
UniProt:Q8VZC7
Coordinates (TAIR10) chr5:+:18444798..18449071
Molecular Weight (calculated) 137933.00 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.48
Length 1222 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSDPLKMAAE TEEIKPVPAA MGEKKDVVLC KKIVETLGGG GDQRVLLVGE AGIGKTRMAQ MVDKEASKDV LCYQTLWLHL NRKFKVNDNY IKEKKFEDEW
0101: SLYENIASQL SLYSDFEETE VGERDEDEEE EKKVEDLLKD LKPKIEKYLL EKKEAVVKKL EDDKKKKEKE AAEKLEAEKK LVDPAAKKAK DHGNKNPTDA
0201: AKEKTTQVVA GGEDKAQTSS ERKPYLLLIL DDEGMTSEYE VMVHLGLEDF LKDHTPRKIL ITRRQETEEA TKSGEHAEGE ANDSQSGEKK EDTDGEDEIR
0301: SADKEEPESQ ARVKTEEKHE KVVPPTIDDL WGSTNTYGEI TFQTTNESQD LLESFNLKEA EALFTSSMFF KDMPNFFFDP VPGTDEKLLN HMLKKSKSLP
0401: AAINVLAKSL EYTVKSKSYK LNKDEEERLL KEKIEMVLSA ERGNPSDQES SSESPKKASG ENPILLLAYK LFKTDGPLKD TILDCFWHSL DFFEHCGCVY
0501: YRDLITQWIL EGYFDPVRSV EKAYQDGHSI FMELIDRGML KIQENNVVVP EMAMRNVIDP RRGGHLGKSR LGFSRVYGGN KRKGIGKITQ LDDMIKTVQA
0601: KKGDKITTIL VSGDRLRRVT PKKFFKNLKE LEVLGLFEPT VKPFVPSFSD QLKLLRVLII RDCDLLKSIE ELKALTKLNT LEVSGASSLS KISEKFFESF
0701: PELRSLHLSG LKIESSPPSI SGLKELHCLI IKDCPLLQDL PNIQELVNLE VVDVSGASGL RTCFDNADGA KKNKSKNKNF YLLTKLQHLD FSGSQIERLP
0801: IFQDSAVAAK LHSLTRLLLR NCSKLRRLPS LKPLSGLQIL DLSGTTSLVE MLEVCFEDKL ELKTLNLSGT NLSELATTIE DLSSLNELLL RDCINLDAIP
0901: NIEKLENLEV IDVSGSAKLA KIEGSFEKMF YLRVVDLSGT QVETPELPAD TKIHCLKRFT RADGKCFERD TWREIKEDIE RDRSENASSS DAVVISQEIT
1001: EKKPVEIREV ESNAPRASDC TEKVDVNKER LLKVPIDRAL YQKALTSLVD SKIPQEEVLE INETNKLDEE ALASAEFVSF VDCTPERVKS IFEKAKLVKG
1101: CWLRMCFDIK DPFDGVDEEN LKSLETLSIT NLLSLETISF IAKLENLKNL SLDCCPKIKT IFPEMPASLP VLNLKHCENL EKVVVGVEVS THTNLDLKVE
1201: NCPKFGDYVM VDHSDVPPPH EC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)