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AT5G45490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.899
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G45440.1); Has 3977 Blast hits to 3964 proteins in 194 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 8; Plants - 3946; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:19834eggNOG:ENOG410J026eggNOG:ENOG410YKJEEMBL:AB018113
EMBL:AY065019EMBL:AY090327EMBL:CP002688EnsemblPlants:AT5G45490
EnsemblPlants:AT5G45490.1EnsemblPlants:AT5G45490.2entrez:834585Gene3D:3.40.50.300
GeneID:834585Genevisible:Q9FHI7GO:GO:0005524GO:GO:0006952
GO:GO:0043531Gramene:AT5G45490.1Gramene:AT5G45490.2hmmpanther:PTHR23155
hmmpanther:PTHR23155:SF496HOGENOM:HOG000112275InParanoid:Q9FHI7IntAct:Q9FHI7
InterPro:IPR002182InterPro:IPR027417iPTMnet:Q9FHI7KEGG:ath:AT5G45490
OMA:IFNDEAVPaxDb:Q9FHI7Pfam:PF00931Pfam:Q9FHI7
PhylomeDB:Q9FHI7PRIDE:Q9FHI7PRO:PR:Q9FHI7ProteinModelPortal:Q9FHI7
Proteomes:UP000006548RefSeq:NP_001078718.1RefSeq:NP_199362.1SMR:Q9FHI7
STRING:3702.AT5G45490.1SUPFAM:SSF52540TAIR:AT5G45490UniGene:At.27587
UniGene:At.27900UniGene:At.74144UniGene:At.74211UniProt:Q9FHI7
Coordinates (TAIR10) chr5:+:18431064..18432128
Molecular Weight (calculated) 40427.70 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.78
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSKNLQQAV LTNEFTTNFI TTCKDWLDVN GLAKGNLEKK RDDNEEEERL KTESKLPGHD IHGFDNEIKS LQHFLLDQKV RREFKSLVIV GEYGVGKTAL
101: CQKIFNDEAV KSVYAPRVWV SMENKESKEG LDGKICVLKK ILKGLGVEEL ILETISTDAK QEFKDNEEVA SNQEAGEIDR ETEKEKELSA LLYALHLNLR
201: WKKYLIVFDD VRENDNWDEK LDAKLKEDEK WGKYLSDGFP KGSGGRVIYT TRDENLAKNL VAQKHEIHRL WPLSDHQSVW KIYDAVVKDK QKESPRNDKK
301: CIDELMNKSR GLPLAARLLA ERDPVFVDDE VGPVGSTHGQ TDSSNRQPAN QASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)