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AT3G23060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: central cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 1905 Blast hits to 1881 proteins in 164 species: Archae - 0; Bacteria - 4; Metazoa - 1370; Fungi - 69; Plants - 271; Viruses - 4; Other Eukaryotes - 187 (source: NCBI BLink).
Protein Annotations
BioGrid:7212EC:6.3.2.-eggNOG:ENOG410XPCNeggNOG:KOG2660
EMBL:AB026655EMBL:AY099845EMBL:BT006623EMBL:CP002686
EnsemblPlants:AT3G23060EnsemblPlants:AT3G23060.1entrez:821880Gene3D:3.30.40.10
GeneID:821880Genevisible:Q9LS86GO:GO:0008270GO:GO:0016567
GO:GO:0016874Gramene:AT3G23060.1hmmpanther:PTHR10825hmmpanther:PTHR10825:SF3
HOGENOM:HOG000153088InParanoid:Q9LS86IntAct:Q9LS86InterPro:IPR001841
InterPro:IPR013083InterPro:IPR017907KEGG:ath:AT3G23060KO:K16277
OMA:NINDTPPPaxDb:Q9LS86Pfam:PF00097Pfam:Q9LS86
Pfscan:PS50089PhylomeDB:Q9LS86PRIDE:Q9LS86PRO:PR:Q9LS86
PROSITE:PS00518PROSITE:PS50089ProteinModelPortal:Q9LS86Proteomes:UP000006548
RefSeq:NP_188946.2scanprosite:PS00518SMART:SM00184SMR:Q9LS86
STRING:3702.AT3G23060.1SUPFAM:SSF57850TAIR:AT3G23060UniGene:At.37773
UniGene:At.67676UniPathway:UPA00143UniProt:Q9LS86
Coordinates (TAIR10) chr3:+:8200868..8203116
Molecular Weight (calculated) 53667.20 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.58
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTKVLSKEV KPCLACPICT NPFKDATTIS ECLHTFCRSC IRNKFINERV NACPVCNVNL GVFPLEKLRS DCTWQDLKLK IYRAMMESLK KAGPKTVAAS
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)