suba logo
AT1G65985.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF247)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT1G67150.2); Has 989 Blast hits to 918 proteins in 19 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC009513EMBL:BT028978EMBL:CP002684EnsemblPlants:AT1G65985
EnsemblPlants:AT1G65985.1entrez:842911GeneID:842911GO:GO:0005886
GO:GO:0016021Gramene:AT1G65985.1hmmpanther:PTHR31170InterPro:IPR004158
KEGG:ath:AT1G65985ncoils:CoilOMA:EMANADYPfam:PF03140
PhylomeDB:Q9SRZ3PIR:C96684Proteomes:UP000006548RefSeq:NP_683470.1
TAIR:AT1G65985TMHMM:TMhelixUniGene:At.28047UniProt:Q9SRZ3
Coordinates (TAIR10) chr1:-:24562578..24568470
Molecular Weight (calculated) 53138.20 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.28
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVHIDLDEK VQEPCIYRVP NRMRVVKPEA YTPKVVVIGP LHRSLKSTAK DGAETSSNPW HLKKDYIKME VTKKTYFESF TKRVGEDTIE EMRKTIQTEE
101: KNIRNCYEES TEWIPSELFV DLILQDSIFI MELIIRLSGF DRIHSDDRNL DFAIVMNDLL LLENQLPYFI LDSLFSFSMT KYLDSHTLDS FILRCFGLKI
201: EEKKNFMHLT DMYRCVYKES LDYIPPREYS LNRVKWSITE LRNAENLSNA GVNFKSYDYL DLSKQDEKLD IKITRDKSDS ELTKLPTNKR ERVEGVSLHV
301: ELKKGCLSMP SFWANDRTDM ILRNVIAFEQ CQHGIIPFTS HYIQFLNALI VSDRDVELLS EKGVVMNNMG RPSLVVDMVN KLKVGVYEGY TSQYYDIAID
401: LKAHYKSRRK RCWATLRKVY FSDLWTGTAT LAAVLLLLLT LVGTVASVIQ AYESFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)