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AT4G02540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EMBL:AC002330EMBL:AK228997EMBL:AL161494EMBL:CP002687
EnsemblPlants:AT4G02540EnsemblPlants:AT4G02540.1entrez:827919ExpressionAtlas:Q9ZQX3
Gene3D:3.30.40.10GeneID:827919GO:GO:0008270GO:GO:0047134
Gramene:AT4G02540.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693
InterPro:IPR004146InterPro:IPR011424InterPro:IPR013083InterPro:IPR019787
Pfam:PF03107Pfam:PF07649Pfscan:PS50016PhylomeDB:Q9ZQX3
PIR:T01095PROSITE:PS50016Proteomes:UP000006548RefSeq:NP_192163.1
SMR:Q9ZQX3STRING:3702.AT4G02540.1SUPFAM:SSF57889TAIR:AT4G02540
UniGene:At.34295UniProt:Q9ZQX3
Coordinates (TAIR10) chr4:+:1117202..1119670
Molecular Weight (calculated) 94858.80 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.28
Length 822 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDSQQKPE SELISLIEKI IFVGKPESQL VVSLVTQTIS LIRSIDSDPD TKQDSEPELM SLISQIYSYL ESRNSDELSS LLDQIVSLVE STYSEPPEMK
101: LASLIKKLMP LIDTQIPPIF TGKSLTYDAK LLLYTKTLAS RDANVVSLIV EIVTLVNSTD LDSLPESELM SVVTQTISFF NSMDLDSQPE PLRKLISIFS
201: QKYFSDSELE LALDWDFMSL VDKTLTFEPE PKLISLILEI VTLVFSMYTQ WDKLISLCPR LNVSLKEEKF HVEPKYKMWN GKLECLPFNW QKFWLTRGEL
301: ASHFLCQGCN GKNHKEYNKA PAEIKHPFHP KHPLLLVSLQ MLSSTRKCYC CDEDLKNIFY YCSACEFAVN FACVQKPPEL SMHHPKWHEH TLALFPTQTP
401: FPCSICALTH SSGPFYTSSG PFYTCPPCDF VIHQKCFSLP RVIRISRHPH RISFTPSFDP EKYWSCGVCR RKIENDYGCY SCVKDGCSYA AHSKCATQTN
501: VWDGKELEGE PEEDMDEEVE SFVTISDGII QHFSHEHHHM RLDVNTDRDY DENKLCQACT TPIYFGNFFS CMQCDFILHE KCANFRRKIH HPTHPHLLTL
601: SRTYEGEHHA FACSACSVWC TAGFFYECNE EACYFKVHVQ CATISEPLVH ESHMHPLFLT SKPEEEQRTC NVCHNLRRGG SETFNCIEEC NFSLCFGCAT
701: IPHKARYKHD KHMLTISYGE KTSTMTYWCE VCEGKIDPKE RFYMCDEYCC VTLHMPCMLG WDLYMKPGSS WIRGSKKVYA LPNNHHMSRP ICPRCERRCP
801: YKTVLKENEL AFCSILCIMW KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)