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AT2G02680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G02690.1); Has 1749 Blast hits to 685 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 10; Plants - 1682; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
EMBL:AC004136EMBL:CP002685EnsemblPlants:AT2G02680EnsemblPlants:AT2G02680.1
entrez:814797GeneID:814797GO:GO:0005622GO:GO:0008270
GO:GO:0035556GO:GO:0047134Gramene:AT2G02680.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR001965InterPro:IPR002219
InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT2G02680Pfam:PF03107
Pfam:PF07649Pfscan:PS50081PhylomeDB:Q8S8R6PIR:T00596
PROSITE:PS50081Proteomes:UP000006548RefSeq:NP_178371.1SMART:SM00249
SMR:Q8S8R6SUPFAM:SSF57889TAIR:AT2G02680UniGene:At.41468
UniProt:Q8S8R6
Coordinates (TAIR10) chr2:+:745775..748573
Molecular Weight (calculated) 74267.60 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.30
Length 649 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLFGEFRKV EIDGKPFLVY HKVMKPLPQI HTPNSSDEET TIEKPLSIQN EETSSDEETI DSGDNLPLPL LFACPIVRLT STVIIDNITL QDDQGKSVEH
101: FFNLKTSPFH GDNTSVDHDP VLPLFWCNNK EADPENDCVI CRAEKVGTDY YYCVECDMRY HKECVESPLR INYPSHANHS FQLYSSKKRF KYCIMCRKKV
201: NGLVYYCALC DMYMHTLCAQ AVIPFFIDQP KRHAHILTLF PRQASLTCNI CGVLDELHFT YVCPICDFVT HADCIYIPQT IRISRHHHCI SFTSSLLKGK
301: WSCGVCRQEV DRKYGAYTCN ACNGYTVHTR CALRNDIWDG KELEGVQEDE EVEPPFKRIS DGIILHFSHG CQMELETSGV HVGGNKFCQA CALPINEENF
401: YICVECDFIL HETCAEAPQK KFHPLHPHAL QQKVVHENDL FLCDACDRLC NGFGYECTFE DCDYILDVVC ASASEPFNYQ GHQHPLFLAL RPNVKPMCHI
501: CKSTKENQVL NCIEGDFIIC FECATLPYVI RYKHDDHYLT LCHGEEASDS DWCELCEGKL STGGEKGFYK CDDCCTTLHI NCLLGPNPFL KPGQTFTLGR
601: NEFLVIRNNS PRPICGTCNM RRPYPVMFFW ESDHRSITKP KEKSSKTLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)