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AT2G35270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Direct target of AGAMOUS. Regulates patterning and differentiation of reproductive organs.
Computational
Description (TAIR10)
GIANT KILLER (GIK); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT4G17800.1); Has 1072 Blast hits to 1056 proteins in 125 species: Archae - 2; Bacteria - 116; Metazoa - 122; Fungi - 9; Plants - 786; Viruses - 5; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGMTeggNOG:ENOG410YG7ZEMBL:AC004667EMBL:BR000357
EMBL:CP002685EnsemblPlants:AT2G35270EnsemblPlants:AT2G35270.1entrez:818094
GeneID:818094Genevisible:O82166GO:GO:0003677GO:GO:0003680
GO:GO:0005654GO:GO:0006351GO:GO:0045892GO:GO:0048440
GO:GO:0048653Gramene:AT2G35270.1hmmpanther:PTHR31100hmmpanther:PTHR31100:SF14
HOGENOM:HOG000239043InterPro:IPR005175KEGG:ath:AT2G35270OMA:NMYSEAT
PaxDb:O82166Pfam:O82166Pfam:PF03479Pfscan:PS51742
PhylomeDB:O82166PIR:E84766PRIDE:O82166PRO:PR:O82166
PROSITE:PS51742ProteinModelPortal:O82166Proteomes:UP000006548RefSeq:NP_181070.1
SMR:O82166STRING:3702.AT2G35270.1SUPFAM:SSF117856TAIR:AT2G35270
tair10-symbols:GIKUniGene:At.66313UniProt:O82166
Coordinates (TAIR10) chr2:+:14857021..14857878
Molecular Weight (calculated) 29146.30 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.28
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)