suba logo
AT4G17800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT2G35270.1); Has 956 Blast hits to 951 proteins in 109 species: Archae - 0; Bacteria - 110; Metazoa - 54; Fungi - 9; Plants - 764; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGMTeggNOG:ENOG410YG7ZEMBL:AF446359EMBL:AL161547
EMBL:AY097416EMBL:BR000359EMBL:CP002687EMBL:Z97344
EnsemblPlants:AT4G17800EnsemblPlants:AT4G17800.1entrez:827502GeneID:827502
Genevisible:O23620GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT4G17800.1hmmpanther:PTHR31100hmmpanther:PTHR31100:SF14
HOGENOM:HOG000239043InterPro:IPR005175KEGG:ath:AT4G17800OMA:REHEDIK
PaxDb:O23620Pfam:O23620Pfam:PF03479Pfscan:PS51742
PhylomeDB:O23620PIR:C71448PRIDE:O23620PRO:PR:O23620
PROSITE:PS51742ProteinModelPortal:O23620Proteomes:UP000006548RefSeq:NP_193515.1
SMR:O23620STRING:3702.AT4G17800.1SUPFAM:SSF117856TAIR:AT4G17800
UniGene:At.20660UniProt:O23620
Coordinates (TAIR10) chr4:-:9895549..9896427
Molecular Weight (calculated) 29725.90 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.23
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)