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AT3G07000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.741
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G06990.1); Has 1493 Blast hits to 650 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 1463; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8VYeggNOG:ENOG41119PWEMBL:AC016827EMBL:BT030350
EMBL:CP002686EnsemblPlants:AT3G07000EnsemblPlants:AT3G07000.1entrez:819885
GeneID:819885GO:GO:0005622GO:GO:0008270GO:GO:0035556
GO:GO:0047134Gramene:AT3G07000.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152
HOGENOM:HOG000064693InterPro:IPR001965InterPro:IPR004146InterPro:IPR011424
KEGG:ath:AT3G07000Pfam:PF03107Pfam:PF07649PhylomeDB:Q9M8Z9
Proteomes:UP000006548RefSeq:NP_187356.1SMART:SM00249SMR:Q9M8Z9
SUPFAM:SSF57889TAIR:AT3G07000UniGene:At.40421UniProt:Q9M8Z9
Coordinates (TAIR10) chr3:+:2209503..2211227
Molecular Weight (calculated) 66278.20 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.39
Length 574 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPITDQPMD QPKQKVKIPC NHMLLYIHLT QSYSYCAVCN GDYGLCYYCS RCNFQAHSEC IEWPDTIDHP SHSRHPLKKV SPGTIDYTDG KCHFCREELV
101: DPMYHCSLCN FSIDVNCWRH PPQRTIYQPK SHEHTFTLMP RKITFTCNAC GMLGDCNPYF CFECGFMLHK DCIDLPRVIN INRHDHRISR TYHLGHGDWG
201: SCGVCRKEID WSLGAYSCKR CPNYAVHSKC AIREDVWNGE ELEDVPEEEE EIEDPYKVVN DKEIIHFCHE EHNLRLGGDD DVTGYEKMLC DACITPISSD
301: PFFKCVQCEF FLHKVCASLP RRKRNIMHTE KLDLQVTKAG EYNKCISCRK IFDGFRYCSR FEKFDVRCGS ISEPFHHELH PHPLYHILSA AEKLKLCGAC
401: GKYLHYVLSC TVCEFNLGMD CATLPRKVRH ICDAHDLSLH HVPGNSKGQQ LWCDSCEGKL DPSVWFYGCD DCGSTLHIKC VLGDFNHLKP GKKYGEAELV
501: VNDGMTRPFC ISCKKRCSFP SFLKATCPNT LCEQRWGFPS FLKAASPDSF VLFACSMDCA YDKYFMLWFY EVDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)