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AT2G28460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.702
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1625 Blast hits to 656 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1622; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G28460EnsemblPlants:AT2G28460.1entrez:817394
Gene3D:3.30.40.10GeneID:817394GO:GO:0008270GO:GO:0047134
Gramene:AT2G28460.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152InParanoid:F4IIQ1
InterPro:IPR001965InterPro:IPR004146InterPro:IPR011424InterPro:IPR013083
KEGG:ath:AT2G28460PaxDb:F4IIQ1Pfam:PF03107Pfam:PF07649
PRIDE:F4IIQ1ProteinModelPortal:F4IIQ1Proteomes:UP000006548RefSeq:NP_180413.2
SMART:SM00249SMR:F4IIQ1SUPFAM:SSF57889TAIR:AT2G28460
UniGene:At.20550UniGene:At.66398UniProt:F4IIQ1
Coordinates (TAIR10) chr2:+:12166655..12168817
Molecular Weight (calculated) 82909.80 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.29
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSKTESKLL SLTSQIMSPA KQIRFDLDWV GEKRMNSFIT KVMSLVSSMD LDLQPKPESE FMSLTTQIFS LLHSMDSDSM PKPLSNLISL LSQGNFDHNT
101: DFRLFFRQTM ALEPEPIFMS LIYQIFSLVI SMNTKRDKLI SLCPQACVVL GNNGNFEVIV KKQEGQAHKG KAIPWSRDSK WECLPFNWKT YWSSGDDVTH
201: FRCRNCDGDN HKEYEKAPVE IKHSLHRKHS LQLVLLDESS YTRVCYCCDE DLKRMFYYCR TCDFGLNFVC AKKEAILYID QPKWHEHTLA LFLRKTSLTC
301: NACGLSHSSC PLYMCPPCDF VIHKSCISLP RLIRISRHFH RIAYTPSFDE GDWSCSVCRK KIDNDYGGYV CTKGCSYAAH SKCATQSNVW DGIELEGEPE
401: DIEEEVLPPF LEISDGIIQH FSHQQHHMKL DENTGRDYDE NKECEACIRP IYFGNFYSCL ECDFILHEEC ANLSRKIHHP IHPHLLNLIG GFDGVINYYN
501: DKCSACIGLC KGGFFYECGK QGCKFMLHVQ CATTSEPLVH ESHRHPLFLT SKPGEKIRCS VCKDSEETFN CIECDFALCF YCAILPQKVR YKHDKHTLTL
601: SYGKETGTSW CEVCEAKINL KGRFYMCNEY CCVTLHIKCT LGDLHMRPGS TWITFGNKVD VLHNSNRMSR SICSYCVKHC PYKIVYMCSG LILCSQGCVV
701: RSILQKRGRY RELEFLSRYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)