suba logo
AT1G77640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G21910.1); Has 5272 Blast hits to 5255 proteins in 230 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 5260; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0ZMeggNOG:ENOG410YX49EMBL:AC010704EMBL:AK176224
EMBL:AY560843EMBL:BT012629EMBL:CP002684EnsemblPlants:AT1G77640
EnsemblPlants:AT1G77640.1entrez:844099Gene3D:3.30.730.10GeneID:844099
Genevisible:Q9CAP4GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT1G77640.1hmmpanther:PTHR31985
hmmpanther:PTHR31985:SF8HOGENOM:HOG000237624InParanoid:Q9CAP4InterPro:IPR001471
InterPro:IPR016177iPTMnet:Q9CAP4KEGG:ath:AT1G77640OMA:CLKGPKA
PaxDb:Q9CAP4Pfam:PF00847Pfam:Q9CAP4Pfscan:PS51032
PhylomeDB:Q9CAP4PIR:A96806PRIDE:Q9CAP4PRINTS:PR00367
PRO:PR:Q9CAP4PROSITE:PS51032ProteinModelPortal:Q9CAP4Proteomes:UP000006548
RefSeq:NP_177887.1SMART:SM00380SMR:Q9CAP4STRING:3702.AT1G77640.1
SUPFAM:SSF54171TAIR:AT1G77640UniGene:At.17793UniProt:Q9CAP4
Coordinates (TAIR10) chr1:+:29178796..29179530
Molecular Weight (calculated) 26982.70 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.66
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKQELKIQV TTSSSSLSHS SSSSSSSTSA LRHQSCKNKI KKYKGVRMRS WGSWVTEIRA PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GPKANLNFPN
101: ITTTSPFLMN IDEKTLLSPK SIQKVAAQAA NSSSDHFTPP SDENDHDHDD GLDHHPSASS SAASSPPDDD HHNDDDGDLV SLMESFVDYN EHVSLMDPSL
201: YEFGHNEIFF TNGDPFDYSP QLHSSEATMD DFYDDVDIPL WSFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)