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AT2G17080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis protein of unknown function (DUF241)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT2G17070.1); Has 750 Blast hits to 734 proteins in 87 species: Archae - 2; Bacteria - 37; Metazoa - 79; Fungi - 28; Plants - 534; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1YJeggNOG:ENOG411180MEMBL:CP002685EMBL:DQ446509
EnsemblPlants:AT2G17080EnsemblPlants:AT2G17080.1entrez:816213GeneID:816213
Gramene:AT2G17080.1hmmpanther:PTHR31509hmmpanther:PTHR31509:SF12InterPro:IPR004320
KEGG:ath:AT2G17080ncoils:CoilOMA:ADIYSHIPfam:PF03087
PhylomeDB:Q1PF57PIR:H84547Proteomes:UP000006548RefSeq:NP_179300.1
STRING:3702.AT2G17080.1TAIR:AT2G17080UniGene:At.66214UniProt:Q1PF57
Coordinates (TAIR10) chr2:-:7433326..7434117
Molecular Weight (calculated) 29639.20 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.54
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSFHVRSN SFPSRSHPQA AHVDEQLARL RSSEQASSSS SSSICQRLDN LQELHESLDK LISRPVTQQA LSQEHNKKAV EQLLDGSLRI LDLCNISKDA
101: LSEMKEGLME IQSILRRKRG DLSEEVKKYL TSRKSLKKSF QKVQKSLKVT QAEDNNDDTL AVFGEAEAIT LSLFDSLLSY MSGSKTCSKW SVVSKLMNKK
201: KVTCEAQENE FTKVDSEFQS EKTLKMDDVQ NLESCIQDLE DGLESLSKSL IKYRVSFLNI LGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)