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AT2G30130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lateral organ boundaries (LOB) domain family protein
Curator
Summary (TAIR10)
Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.
Computational
Description (TAIR10)
ASL5; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1148 Blast hits to 1140 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1024; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVWNeggNOG:ENOG410YM9VEMBL:AB164306EMBL:AB473838
EMBL:AC004165EMBL:AY086960EMBL:CP002685EnsemblPlants:AT2G30130
EnsemblPlants:AT2G30130.1entrez:817565GeneID:817565Genevisible:Q8LBW3
GO:GO:0003677GO:GO:0009965GO:GO:0010016Gramene:AT2G30130.1
hmmpanther:PTHR31301hmmpanther:PTHR31301:SF4HOGENOM:HOG000237548InParanoid:Q8LBW3
InterPro:IPR004883KEGG:ath:AT2G30130ncoils:CoilOMA:SSIMQMQ
PaxDb:Q8LBW3Pfam:PF03195Pfam:Q8LBW3Pfscan:PS50891
PhylomeDB:Q8LBW3PIR:T00585PRO:PR:Q8LBW3PROSITE:PS50891
ProteinModelPortal:Q8LBW3Proteomes:UP000006548RefSeq:NP_565695.1STRING:3702.AT2G30130.1
TAIR:AT2G30130tair10-symbols:ASL5tair10-symbols:LBD12tair10-symbols:PCK1
UniGene:At.38397UniProt:Q8LBW3
Coordinates (TAIR10) chr2:+:12868740..12869684
Molecular Weight (calculated) 21530.70 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.36
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)