AT5G17860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calcium exchanger 7 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
calcium exchanger 7 (CAX7); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: cation calcium exchanger 4 (TAIR:AT1G54115.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5902638..5904350 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61867.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 570 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLFSSRLG SQSLSLLINI FFIFLIFLHF ASQTPPPSGS IQTLNSFAGG DSDSCSGGLA SLDDHRSKCS YIRSQSKCGP QGYIDYLKIF FCIFGQSPVL 101: GHLVLSAWLF VLFYLLGDTA ASYFCPSLDS LSKVLKLSPT MAGVTLLSLG NGAPDLFSSV VSFTRSNNGD FGLNSILGGA FFVSSFVVGT ICVLIGSRDV 201: AIDRNSFIRD VVFLLVALCC LGLIIFIGKV TIWVALCYLS IYLLYVGFLS VSHFFDRKKR MSDQILRSRE DLAEMGVSLL GYIAEEKLAL PEKTTQEFKI 301: VFEDSPKRHR SCFSVLVSII GLPLYLPRRL TIPVVCEEKW SKPCAVVSTA IAPVLLTELY CSHYSGSQRN LILYIISGSI GLIVGILAYL TTEKSHPPKK 401: FSLVWLLGGF TMSVTWTYMI AQELVSLLIS LGNIFGISPS VLGLTVLAWG NSLGDLIANV TVAFHGGNDG AQIALSGCYA GPLFNTVIGL GVPLVISSLA 501: EYPGVYIIPS DNSLLETLGF LMVGLLWALV IMPKKKMRLD KLVGGGLLAI YLCFLSLRLA RVFGVLDTDR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)