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AT4G16490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01400.1); Has 4881 Blast hits to 3043 proteins in 255 species: Archae - 2; Bacteria - 6; Metazoa - 869; Fungi - 533; Plants - 2917; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:CP002687EnsemblPlants:AT4G16490
EnsemblPlants:AT4G16490.1entrez:827347Gene3D:1.25.10.10GeneID:827347
Gramene:AT4G16490.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF129InParanoid:F4JMH0
InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT4G16490
OMA:HSMRTIRPaxDb:F4JMH0Pfam:PF00514Pfscan:PS50176
PRIDE:F4JMH0PROSITE:PS50176ProteinModelPortal:F4JMH0Proteomes:UP000006548
RefSeq:NP_567501.4SMART:SM00185SMR:F4JMH0STRING:3702.AT4G16490.1
SUPFAM:SSF48371TAIR:AT4G16490UniGene:At.23147UniGene:At.75353
UniProt:F4JMH0
Coordinates (TAIR10) chr4:-:9293891..9295530
Molecular Weight (calculated) 50326.90 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.14
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)