AT4G16490.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01400.1); Has 4881 Blast hits to 3043 proteins in 255 species: Archae - 2; Bacteria - 6; Metazoa - 869; Fungi - 533; Plants - 2917; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:-:9293891..9295530 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50326.90 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
Length | 472 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM 101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK 201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK 301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED 401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)