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AT3G28910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 30
Curator
Summary (TAIR10)
transcription factor myb homologue
Computational
Description (TAIR10)
myb domain protein 30 (MYB30); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 9437 Blast hits to 8283 proteins in 550 species: Archae - 0; Bacteria - 9; Metazoa - 928; Fungi - 510; Plants - 5797; Viruses - 10; Other Eukaryotes - 2183 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59548NeggNOG:COG5147eggNOG:KOG0048EMBL:AF250339
EMBL:AJ007289EMBL:AP000386EMBL:AY081278EMBL:AY114560
EMBL:AY519592EMBL:CP002686EnsemblPlants:AT3G28910EnsemblPlants:AT3G28910.1
entrez:822525Gene3D:1.10.10.60GeneID:822525Genevisible:Q9SCU7
GO:GO:0001666GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009617GO:GO:0009626GO:GO:0009723
GO:GO:0009733GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0042761Gramene:AT3G28910.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF641
IntAct:Q9SCU7InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT3G28910KO:K09422OMA:PDITGCCPaxDb:Q9SCU7
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9SCU7PIR:T51621
PROSITE:PS51294ProteinModelPortal:Q9SCU7Proteomes:UP000006548RefSeq:NP_189533.1
SMART:SM00717SMR:Q9SCU7STRING:3702.AT3G28910.1SUPFAM:SSF46689
TAIR:AT3G28910tair10-symbols:ATMYB30tair10-symbols:MYB30UniGene:At.10902
UniGene:At.67623UniProt:Q9SCU7
Coordinates (TAIR10) chr3:+:10911443..10912856
Molecular Weight (calculated) 35920.70 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.71
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)