AT3G03000.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 1.000 ASURE: vacuole What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : EF hand calcium-binding protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
EF hand calcium-binding protein family; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G32250.1); Has 24706 Blast hits to 18078 proteins in 1578 species: Archae - 2; Bacteria - 105; Metazoa - 9402; Fungi - 6368; Plants - 5242; Viruses - 0; Other Eukaryotes - 3587 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:677388..677885 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 18091.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 165 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR 101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)