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AT3G03000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EF hand calcium-binding protein family
Curator
Summary (TAIR10)
Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner
Computational
Description (TAIR10)
EF hand calcium-binding protein family; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G32250.1); Has 24706 Blast hits to 18078 proteins in 1578 species: Archae - 2; Bacteria - 105; Metazoa - 9402; Fungi - 6368; Plants - 5242; Viruses - 0; Other Eukaryotes - 3587 (source: NCBI BLink).
Protein Annotations
BioGrid:6494eggNOG:COG5126eggNOG:KOG0027EMBL:AC018363
EMBL:AY045602EMBL:AY090328EMBL:CP002686EnsemblPlants:AT3G03000
EnsemblPlants:AT3G03000.1entrez:821161Gene3D:1.10.238.10GeneID:821161
Genevisible:Q9M8U1GO:GO:0000325GO:GO:0005509GO:GO:0043269
Gramene:AT3G03000.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF290HOGENOM:HOG000233018
InParanoid:Q9M8U1IntAct:Q9M8U1InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT3G03000KO:K13448OMA:AFDNSWA
PaxDb:Q9M8U1Pfam:PF13499Pfam:Q9M8U1Pfscan:PS50222
PhylomeDB:Q9M8U1PRIDE:Q9M8U1PRO:PR:Q9M8U1PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9M8U1Proteomes:UP000006548RefSeq:NP_186950.1
scanprosite:PS00018SMART:SM00054SMR:Q9M8U1STRING:3702.AT3G03000.1
SUPFAM:SSF47473TAIR:AT3G03000UniGene:At.20115UniProt:Q9M8U1
Coordinates (TAIR10) chr3:+:677388..677885
Molecular Weight (calculated) 18091.20 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.34
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)