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AT4G10930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11991eggNOG:ENOG410IGP8eggNOG:ENOG410Y9SPEMBL:AF080118
EMBL:AL049525EMBL:AL161518EMBL:AY133683EMBL:CP002687
EnsemblPlants:AT4G10930EnsemblPlants:AT4G10930.1entrez:826692GeneID:826692
Genevisible:Q8L7I1Gramene:AT4G10930.1HOGENOM:HOG000155314InParanoid:Q8L7I1
IntAct:Q8L7I1InterPro:IPR031736iPTMnet:Q8L7I1KEGG:ath:AT4G10930
OMA:LLAPKEMPaxDb:Q8L7I1Pfam:PF15870Pfam:Q8L7I1
PhylomeDB:Q8L7I1PIR:T01884PRIDE:Q8L7I1PRO:PR:Q8L7I1
ProteinModelPortal:Q8L7I1Proteomes:UP000006548RefSeq:NP_567370.1STRING:3702.AT4G10930.1
TAIR:AT4G10930UniGene:At.33598UniProt:Q8L7I1
Coordinates (TAIR10) chr4:-:6705178..6708846
Molecular Weight (calculated) 108077.00 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.78
Length 984 amino acids
Sequence (TAIR10)
(BLAST)
001: METQPDTSLM ETRKSLDISE KTNSGCSVEA VYSGNFSVTV ADDGETALVV SIVKGDESHM GPSDTNPLPV QAKMDGDPDS SHLKILCREE NTEQVAVKSE
101: LNQSLPHDIS SRLSSDSDQP FFAADIENRA DPVVEKDCLS IDDKKNLSTA AISNSDVASV ISLKRKHSDC SGDDGNSETK PEIYESLNEL KLEEEEELTT
201: VHHESRSPSN NTTVDIFSIV KGTGRRKNLM RSNPTDKSSE AENAAGLRVK KIKRTPEDEK ESMVLVEKLR KEIREAVRNK SMEDIRENQF DPKLLAAFRA
301: AVAGPKTGEA PRRSSALAVK AKKLMLQKGK VRENLTKKIY ADLNGKRKSA WHRDCEVEFW KHRCIQGRKP EKIETLKSVL SLLKNKPADT KTNFSSETPQ
401: ASNPILSRLY LADTSVFPRN DNLKPLLAPK EMGNSQNNGK PTEASKTLPK ISAAKGSSVK AAGSKLNSGN KQSDGQPNLT SSNSKEMVEN PDDLKKDKRK
501: WALQVLARKK ALAGNNSTQD KEGSPELKGN YPLLAQLPAD MRPSLATSRH NKVPVAVRQT QLYRLTEHLL KKENLLTIRR SAATELAVAD AINIEKAIAD
601: KSSSKVVYLN LCSQEILHHS ESKTMDNAVE PNSSSPMADS ESERISSKDS DNPAVLEALR AAGLADSPPN SPTRSVEVLP EKGDSSLDKT RETGPYNVFD
701: MDSVPDTDIF GDFEYELDEE DYFGATMAKK ASVMQPDESL TKVKVVLSTV QPGKSLNPSE VVEDEETTTE NLNETTNGKE DGKSFVPMEL VPEAEGEGEG
801: EGEGEGEGEG GGEILSVAEC EELYGPGTEK LVERPLIEGF AENGVKAKAP DSECESNTQR EFIASNFEIT CIQEKKLPRS IQKCKPSEKP SKEEKGKADG
901: FGNSITKKVE AYIKEHIRPL CKSGVINVEQ YRWAVTKTTE KVMKYHSKAK SANFLIKEGD KIKKLAEQYV ETASSGAHHK DKCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)