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AT4G20780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin like 42
Curator
Summary (TAIR10)
Calcium sensor involved in trichome branching.
Computational
Description (TAIR10)
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Protein Annotations
BioGrid:13117DNASU:827826eggNOG:COG5126eggNOG:KOG0027
EMBL:AK117845EMBL:AL080254EMBL:AL161553EMBL:BT003724
EMBL:CP002687EnsemblPlants:AT4G20780EnsemblPlants:AT4G20780.1entrez:827826
Gene3D:1.10.238.10GeneID:827826Genevisible:Q9SVG9GO:GO:0005509
GO:GO:0010091Gramene:AT4G20780.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF589
HOGENOM:HOG000233018InParanoid:Q9SVG9IntAct:Q9SVG9InterPro:IPR002048
InterPro:IPR011992InterPro:IPR018247iPTMnet:Q9SVG9KEGG:ath:AT4G20780
KO:K13448OMA:IKPENTGPaxDb:Q9SVG9Pfam:PF00036
Pfam:PF13499Pfam:Q9SVG9Pfscan:PS50222PhylomeDB:Q9SVG9
PIR:T10620PRIDE:Q9SVG9PRO:PR:Q9SVG9PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9SVG9Proteomes:UP000006548RefSeq:NP_193810.1
scanprosite:PS00018SMART:SM00054SMR:Q9SVG9STRING:3702.AT4G20780.1
SUPFAM:SSF47473TAIR:AT4G20780tair10-symbols:CML42UniGene:At.32700
UniProt:Q9SVG9
Coordinates (TAIR10) chr4:-:11133309..11133884
Molecular Weight (calculated) 21148.60 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.54
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)