AT3G11840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : plant U-box 24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
plant U-box 24 (PUB24); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: respiratory burst involved in defense response, protein autoubiquitination, response to chitin, defense response; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 23 (TAIR:AT2G35930.1); Has 2348 Blast hits to 2308 proteins in 197 species: Archae - 0; Bacteria - 24; Metazoa - 273; Fungi - 129; Plants - 1697; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:3736578..3738250 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53026.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNIYTYTKSY VFPQMDQEEE EIEIPNYFIC PISLEIMKDP VTTVSGITYD RQNIVKWLEK VPSCPVTKQP LPLDSDLTPN HMLRRLIQHW CVENETRGVV 101: RISTPRVPPG KLNVVEEIKN LKKFGQEALG REETLQKLEV LAMDGNNRRL MCECGVHKSL ILFVVKCTSE DEDGRRRIKG LDESLRLLHL IGIPSNDAKT 201: ILMENDRVME SLTWVLHQED FLSKAYTIVL LRNLTEYTSS HIVERLNPEI FKGIIGFLKD VVNSVNRTSP TVRETVQSSS RPSLGKTEPS KLDHSLVIKQ 301: AVTAALMILL ETSSWSRNRS LLVDLGAVSE LIELEISYTG EKRITELMLG VLSRLCCCAN GRAEILAHRG GIAVVTKRLL RVSPAADDRA ISILTTVSKF 401: SPENMVVEEM VNVGTVEKLC SVLGMDCGLN LKEKAKEILK DHFDEWKKFP CIDITLLTKL LSISPKGPKI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)