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AT2G23770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Protein kinase, catalytic domain (InterPro:IPR000719), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G33580.1); Has 93408 Blast hits to 92552 proteins in 3130 species: Archae - 75; Bacteria - 9623; Metazoa - 34895; Fungi - 6839; Plants - 28747; Viruses - 328; Other Eukaryotes - 12901 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G23770-MONOMERBioGrid:2261EC:2.7.11.1eggNOG:COG0515
eggNOG:ENOG410IGC6EMBL:AC004482EMBL:CP002685EnsemblPlants:AT2G23770
EnsemblPlants:AT2G23770.1entrez:816909Gene3D:2.60.120.200Gene3D:3.10.350.10
GeneID:816909Genevisible:O64825GO:GO:0004672GO:GO:0005524
GO:GO:0005886GO:GO:0008061GO:GO:0016021GO:GO:0045087
GO:GO:0071219GO:GO:0071323Gramene:AT2G23770.1hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF174HOGENOM:HOG000238861InParanoid:O64825InterPro:IPR000719
InterPro:IPR001245InterPro:IPR007110InterPro:IPR011009InterPro:IPR013320
InterPro:IPR018392iPTMnet:O64825KEGG:ath:AT2G23770OMA:CHHRGRW
PaxDb:O64825Pfam:O64825Pfam:PF01476Pfam:PF07714
Pfscan:PS50011Pfscan:PS50835PhylomeDB:O64825PIR:T02414
PRIDE:O64825PRO:PR:O64825PROSITE:PS50011PROSITE:PS51782
ProteinModelPortal:O64825Proteomes:UP000006548RefSeq:NP_179957.1SMART:SM00257
SMR:O64825STRING:3702.AT2G23770.1SUPFAM:SSF56112TAIR:AT2G23770
TMHMM:TMhelixUniGene:At.39248UniProt:O64825
Coordinates (TAIR10) chr2:-:10120242..10122080
Molecular Weight (calculated) 66622.30 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.06
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MISFSFHLLV FILLSLSSFA TAQQPYVGIS TTDCSVSDNT TSVFGYSCNG LNKTCQAYVI FRSTPSFSTV TSISSLFSVD PSLVSSLNDA SPSTSFPSGQ
101: QVIIPLTCSC TGDDSQSNIT YTIQPNDSYF AIANDTLQGL STCQALAKQN NVSSQSLFPG MRIVVPIRCA CPTAKQINED GVKYLMSYTV VFEDTIAIIS
201: DRFGVETSKT LKANEMSFEN SEVFPFTTIL IPLVNPPANT NSLIPPPPPP PPQSVSPPPL SPDGRKSKKK TWVYALAGVL GGALVLSVIG AAIFCLSKKK
301: TKTQTQEETG NLDSFMGKKP PMSDQEFDPL DGLSGMVVES LKVYKFHELQ SATSDFTSSS SIGGSGYIGK INGDGAMIKK IEGNASEEVN LLSKLNHLNI
401: IRLSGFCFHE GDWYLVYEHA SNGSLSEWIH TTKSLLSLTQ KLQIALDIAT GLNYLHNFAD PPYVHRDLNS NNVFLDLEFR AKIGSLGSAR STTEDFVLTK
501: HVEGTRGYLA PEYLEHGLVS TKLDVYAFGV VLLEIVTGKE ASELKKEIDE GKAIDEILIH GRLLPEGLTS FVERLVVDCL KKDHLNRPSM DENVMSLSKI
601: LAATQNWEES SY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)