AT2G23770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Protein kinase, catalytic domain (InterPro:IPR000719), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G33580.1); Has 93408 Blast hits to 92552 proteins in 3130 species: Archae - 75; Bacteria - 9623; Metazoa - 34895; Fungi - 6839; Plants - 28747; Viruses - 328; Other Eukaryotes - 12901 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:10120242..10122080 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 66622.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MISFSFHLLV FILLSLSSFA TAQQPYVGIS TTDCSVSDNT TSVFGYSCNG LNKTCQAYVI FRSTPSFSTV TSISSLFSVD PSLVSSLNDA SPSTSFPSGQ 101: QVIIPLTCSC TGDDSQSNIT YTIQPNDSYF AIANDTLQGL STCQALAKQN NVSSQSLFPG MRIVVPIRCA CPTAKQINED GVKYLMSYTV VFEDTIAIIS 201: DRFGVETSKT LKANEMSFEN SEVFPFTTIL IPLVNPPANT NSLIPPPPPP PPQSVSPPPL SPDGRKSKKK TWVYALAGVL GGALVLSVIG AAIFCLSKKK 301: TKTQTQEETG NLDSFMGKKP PMSDQEFDPL DGLSGMVVES LKVYKFHELQ SATSDFTSSS SIGGSGYIGK INGDGAMIKK IEGNASEEVN LLSKLNHLNI 401: IRLSGFCFHE GDWYLVYEHA SNGSLSEWIH TTKSLLSLTQ KLQIALDIAT GLNYLHNFAD PPYVHRDLNS NNVFLDLEFR AKIGSLGSAR STTEDFVLTK 501: HVEGTRGYLA PEYLEHGLVS TKLDVYAFGV VLLEIVTGKE ASELKKEIDE GKAIDEILIH GRLLPEGLTS FVERLVVDCL KKDHLNRPSM DENVMSLSKI 601: LAATQNWEES SY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)