AT4G28350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.894 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Concanavalin A-like lectin protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cotyledon, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1); Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127; Bacteria - 13536; Metazoa - 42743; Fungi - 9918; Plants - 33874; Viruses - 420; Other Eukaryotes - 16954 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:14026577..14028622 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72069.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 649 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFSKVSILLF SLASLLLFRS TTGIEFIYNS NFTTTNTLLL GNATVKSPPS ILTLTNQTTF SIGRGLYPSR INASSSSASP LPFATSFIFS MAPFKHLSPG 101: HGFAFVFLPF SETSAASSSQ HLGLFNFTNN GDPNSRIFAV EFDVFANQEF NDINDNHVGV DVNSLTSVAS ETAGFYGGRD GQRFTELKLN SGENYQAWIE 201: FNGSAINVTM ARASSRKPIR PLISIPLNLT GVLLDDMFVG FTASTGQLVQ SHRILSWSFS NSNFSIGDSV LKSKGFIAGV SSGVVLQRLE GDVEDWETEY 301: WPHRVQYKDV LEATKGFSDE NMIGYGGNSK VYRGVLEGKE VAVKRIMMSP RESVGATSEF LAEVSSLGRL RHKNIVGLKG WSKKGGESLI LIYEYMENGS 401: VDKRIFDCNE MLNWEERMRV IRDLASGMLY LHEGWETKVL HRDIKSSNVL LDKDMNARVG DFGLAKLQNT SKEMVSTTHV VGTAGYMAPE LVKTGRASAQ 501: TDVYSFGVFV LEVVCGRRPI EEGREGIVEW IWGLMEKDKV VDGLDERIKA NGVFVVEEVE MALRIGLLCV HPDPRVRPKM RQVVQILEQG RLVEDGGERE 601: ISLLERVKSS YLLETGEGSR QQHPTFQDVW NSSSYSNSFQ TYDSILHGR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)