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AT2G22680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 1023 Blast hits to 1022 proteins in 225 species: Archae - 2; Bacteria - 267; Metazoa - 133; Fungi - 122; Plants - 361; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2304eggNOG:ENOG410IEK7EMBL:AC006340EMBL:AY091112
EMBL:AY142578EMBL:CP002685EMBL:DQ086852EnsemblPlants:AT2G22680
EnsemblPlants:AT2G22680.1entrez:816799Gene3D:3.30.40.10Gene3D:3.40.50.410
GeneID:816799GO:GO:0008270Gramene:AT2G22680.1hmmpanther:PTHR10579
hmmpanther:PTHR10579:SF59HOGENOM:HOG000240591IntAct:Q9ZQ46InterPro:IPR001841
InterPro:IPR002035InterPro:IPR013083KEGG:ath:AT2G22680OMA:SPKLQCK
Pfam:PF00092Pfam:PF13519Pfam:PF17123Pfscan:PS50089
Pfscan:PS50234PhylomeDB:Q9ZQ46PIR:E84615PROSITE:PS50089
PROSITE:PS50234Proteomes:UP000006548RefSeq:NP_179853.1SMART:SM00184
SMART:SM00327SMR:Q9ZQ46STRING:3702.AT2G22680.1SUPFAM:SSF53300
SUPFAM:SSF57850TAIR:AT2G22680UniGene:At.39404UniGene:At.71787
UniProt:Q9ZQ46
Coordinates (TAIR10) chr2:+:9645433..9647484
Molecular Weight (calculated) 74404.80 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.29
Length 683 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNGWRRAFC TSIPKETNQN DVDDDGLVGL RHKSTSRFGF FSTPSTPRSD SGTGTYSLRC RTSTATAVST TSSLPGTPKL KCKTTTTGET TPRNRSLVSL
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)