AT1G23760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BURP domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes aromatic rich glycoprotein JP630. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
JP630; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 1783 Blast hits to 1423 proteins in 248 species: Archae - 0; Bacteria - 362; Metazoa - 287; Fungi - 197; Plants - 556; Viruses - 4; Other Eukaryotes - 377 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8402142..8404147 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68232.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||
| Length | 622 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKQFVFLLP FLSRLYHVVI AGGERLTNGG FSPEINPFTP KASLVRYWNK QIHHQSPGSA FLLSKASPLT AVASATFAKL ASENALPDRL PDFCSAANLF 101: CFPDLGPTLE KHSNDVKFSV YDQRNFTNYG TIHPGGADSF KKYSQNGNAV TDSFRRYSRD AAGHEDKFTG YADNSNVVEE KFNSYGTSAT GGSGDFKNYQ 201: SGVNNPTTRF KAYSDEGNGR AQTFKTYTHE ANSGPGQSFT SYGKNGNGAP NEFSSYGVSS NVIGSDFSNY GENGNAANDT FKGYGGDGNV PQNNFKSYGA 301: SGNAAVDTFL NYRDNANVGD DSFSSYAKNS NFEKVDFVNY GKSINPGSES FSGYGKGAEG NKIDFKTYTQ NSTFKDYTKT GVEFAKYNRS SLGGGKTVNK 401: WVEPGKFFRE SMLKEGTLIW MPDIKDKMPK RSFLPRSIVS KLPFSTSKIA EIKRVFHAND NSTMEGIITD AVRECERPPT VSETKRCVGS AEDMIDFATS 501: VLGRSVVLRT TESVAGSKEK VMIGKVNGIN GGRVTKSVSC HQSLYPYLLY YCHSVPKVRV YESDLLDPKS KAKINHGIAI CHMDTSAWGA NHGAFMLLGS 601: RPGQIEVCHW IFENDMNWAI AD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)