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AT1G14890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.507
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G01610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXANeggNOG:ENOG410YPKAEMBL:CP002684EnsemblPlants:AT1G14890
EnsemblPlants:AT1G14890.1entrez:838054Gene3D:1.20.140.40GeneID:838054
GO:GO:0004857Gramene:AT1G14890.1hmmpanther:PTHR31080hmmpanther:PTHR31080:SF10
InParanoid:F4HXW0InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT1G14890OMA:PAFRFQMPaxDb:F4HXW0Pfam:PF04043
PRIDE:F4HXW0ProteinModelPortal:F4HXW0Proteomes:UP000006548RefSeq:NP_563960.2
SMART:SM00856STRING:3702.AT1G14890.1SUPFAM:SSF101148TAIR:AT1G14890
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.20937
UniGene:At.28525unipathway:UPA00545UniProt:F4HXW0
Coordinates (TAIR10) chr1:+:5137045..5137704
Molecular Weight (calculated) 24323.00 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.29
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTRNKEEIN RVKNLKLKMG RQLYTTTVLY LVTLLFICRT ISAVRFPPEQ PTTDDLDFIR TSCNTTLYPD VCYTSLAGYA SAVQDNPARL AKLAIGVSLS
101: RAKYTAAYLS KLSRRAASAA VHDCVSNVGD AVDQMRGSLR QLREMNHRRP GDPAFRFQMS NVQTWMSAAL TDEETCTDGV TEEMEDGETK TAICDRVADV
201: KRFTSNALAL VNTYANNGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)