AT5G04770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cationic amino acid transporter 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cationic amino acid transporter 6 (CAT6); CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 7 (TAIR:AT3G10600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1379118..1382304 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62812.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 583 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVQSSSNNG GHSSFSSLRV YLNSLSATPS RLSRRAISVS TSSDEMSRVR AVSGEQMRRT LRWYDLIGLG IGGMVGAGVF VTTGRASRLD AGPSIVVSYA 101: IAGLCALLSA FCYTEFAVHL PVAGGAFSYI RITFGEFPAF FTGANLVMDY VMSNAAVSRS FTAYLGTAFG ISTSKWRFVV SGLPKGFNEI DPVAVLVVLV 201: ITVIICCSTR ESSKVNMIMT AFHIAFIFFV IVMGFIKGDS KNLSSPANPE HPSGFFPFGA AGVFNGAAMV YLSYIGYDAV STMAEEVENP VKDIPVGVSG 301: SVAIVTVLYC LMAVSMSMLL PYDLIDPEAP FSAAFRGSNG WEWVTKVVGI GASFGILTSL LVAMLGQARY MCVIGRSRVV PFWFAKIHPK TSTPVNASTF 401: LGIFTAALAL FTDLNVLLNL VSIGTLFVFY MVANALIFRR YVPVGPTKPW PTLCFLTLFS ITSLVFTLIW KLVPEGKPKA FMLGASAVVA IAIVLSFQCV 501: VPQARKPELW GVPFMPWTPC VSIFLNIFLL GSLDAPSYVR FGFFSGLIVL VYLFYGVHAS SDAEANGSFG VKDGQVMKEL IEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)