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AT4G24650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : isopentenyltransferase 4
Curator
Summary (TAIR10)
AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds
Computational
Description (TAIR10)
isopentenyltransferase 4 (IPT4); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 7797 Blast hits to 7659 proteins in 2559 species: Archae - 0; Bacteria - 5257; Metazoa - 173; Fungi - 163; Plants - 285; Viruses - 0; Other Eukaryotes - 1919 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24650-MONOMERBioCyc:MetaCyc:AT4G24650-MONOMERBRENDA:2.5.1.112EC:2.5.1.112
eggNOG:COG0324eggNOG:KOG1384EMBL:AB061402EMBL:AB062611
EMBL:AL035356EMBL:AL161561EMBL:CP002687EnsemblPlants:AT4G24650
EnsemblPlants:AT4G24650.1entrez:828567Gene3D:3.40.50.300GeneID:828567
Genevisible:Q9SB60GO:GO:0005524GO:GO:0005739GO:GO:0005829
GO:GO:0006400GO:GO:0009691GO:GO:0009824GO:GO:0052381
GO:GO:0052622GO:GO:0052623Gramene:AT4G24650.1gramene_pathway:2.5.1.-
gramene_pathway:PWY-2681HAMAP:MF_00185hmmpanther:PTHR11088hmmpanther:PTHR11088:SF27
HOGENOM:HOG000238182InParanoid:Q9SB60InterPro:IPR018022InterPro:IPR027417
KEGG:00908+2.5.1.75KEGG:ath:AT4G24650KO:K10760OMA:ICSELKY
PaxDb:Q9SB60Pfam:PF01715Pfam:Q9SB60PhylomeDB:Q9SB60
PIR:T05569PRO:PR:Q9SB60ProteinModelPortal:Q9SB60Proteomes:UP000006548
RefSeq:NP_194196.1SMR:Q9SB60STRING:3702.AT4G24650.1SUPFAM:SSF52540
TAIR:AT4G24650tair10-symbols:ATIPT4tair10-symbols:IPT4UniGene:At.2544
UniProt:Q9SB60
Coordinates (TAIR10) chr4:+:12720466..12721422
Molecular Weight (calculated) 36676.20 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.42
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MKCNDKMVVI MGATGSGKSS LSVDLALHFK AEIINSDKMQ FYDGLKITTN QSTIEDRRGV PHHLLGELNP EAGEVTAAEF RVMAAEAISE ITQRKKLPIL
101: AGGSNSYIHA LLAKSYDPEN YPFSDHKGSI CSELKYDCCF IWIDVDQSVL FEYLSLRLDL MMKSGMFEEI AEFHRSKKAP KEPLGIWKAI GVQEFDDYLK
201: MYKWDNDMDK WDPMRKEAYE KAVRAIKENT FQLTKDQITK INKLRNAGWD IKKVDATASF REAIRAAKEG EGVAEMQRKI WNKEVLEPCV KIVRSHLDQP
301: INYYYYYFYL LKRFLSLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)