AT2G46060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transmembrane protein-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18941355..18945000 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89796.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||
| Length | 807 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEILFLLLR TLVVFSCALS ICNCLQDAAD NNGNFFTVSS FRYPESEVRP YDTRYIRVDL PPWFSSLNVA IESDVDITAK SISKISKSLL PVICFRDGSP 101: PLPDASTNAL QGLELGRFFN GSFERAQDSE IAQQCYPMQK NITLRLTNEQ ISPGAWYVGL FNGIGATRTQ GKMIVRSSAF SFSANISVEG CKTATMWGPF 201: CNQTIYPLSC SRFDNQTASV ISCADSFPSS CLTGAETKTY ALDVDGIAEQ LVIMASNVKV DSNESYLMCY ARFEAFASET LHDYAADIHK VPLIVNKPKA 301: GRWYIVISLS GRENRFAQGT NSSSRVCFSI NVKVLGCPVG KAGPNCGQQI YILQAVMRRG WLTPFQSYYF PVNDASLSGS STNFPLEPIV SNFSSIPELD 401: TSTWTYFLMN IPQGGSGGHI HFRLLSDSTI QYEVYLRFGG LPTIDDRDYY YVNRTSASRS MFFSLYNSSK EMVDFYILYA REGTWSFGLR QLIDSNTPAA 501: SRGSPTLVSL SLERCPRGCS SYGQCRYAFD ANGLTSYSFC SCDRTHGGFD CSIEIVSHQE HIVQSIALIA SNAAALLPAY WALRQREYPE WVLFTSSGIS 601: SALYHACDVG TWCVLSYNVL QFMDFWLSFM AVVGTFVYLS TAGEAVKRTI HTVVAILTAL LALTQATRAS NIIIVLAIGS LGLLIGFLVE FVTKYRSYCG 701: SAGFSLNMLD RPRAVKEWFS NLIKTLKKRF RWGFVAAGLV AFTMAAISFK VETSSSYWMW HSIWHFTIYT SSFFFLCSKI AIVNHENLAH NGADNYELTR 801: QDSLSRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)