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AT3G05040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.536
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.
Computational
Description (TAIR10)
HASTY (HST); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 520 Blast hits to 417 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 183; Plants - 102; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
BioGrid:5001eggNOG:COG5101eggNOG:KOG2020EMBL:AC009465
EMBL:AK229239EMBL:AY198396EMBL:CP002686EnsemblPlants:AT3G05040
EnsemblPlants:AT3G05040.1entrez:819666Gene3D:1.25.10.10GeneID:819666
Genevisible:Q0WP44GO:GO:0005634GO:GO:0009910GO:GO:0009944
GO:GO:0009965GO:GO:0035281GO:GO:0048364GO:GO:0048367
Gramene:AT3G05040.1hmmpanther:PTHR11223hmmpanther:PTHR11223:SF3HOGENOM:HOG000030502
InParanoid:Q0WP44IntAct:Q0WP44InterPro:IPR011989InterPro:IPR013598
InterPro:IPR016024iPTMnet:Q0WP44KEGG:ath:AT3G05040KO:K14289
ncoils:CoilOMA:TELVMLIPaxDb:Q0WP44Pfam:PF08389
Pfam:Q0WP44PhylomeDB:Q0WP44PRIDE:Q0WP44PRO:PR:Q0WP44
ProteinModelPortal:Q0WP44Proteomes:UP000006548Reactome:R-ATH-203927RefSeq:NP_187155.2
STRING:3702.AT3G05040.1SUPFAM:SSF48371TAIR:AT3G05040tair10-symbols:HST
tair10-symbols:HST1UniGene:At.40739UniProt:Q0WP44
Coordinates (TAIR10) chr3:-:1401479..1408095
Molecular Weight (calculated) 133136.00 Da
IEP (calculated) 6.31
GRAVY (calculated) 0.00
Length 1202 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEDSNSTASN VARAILAVVD FSSTSDTRKS AVQFLDSVKS GDVRVLAKTS FHLVKKEWSS EIRLHAFKML QHLVRLRWDE LSPPECRGLV NLSIELMSEV
0101: ANASENWPLK SQSAALVAEI VRREGPDRWQ EIFTLLTSLS AQGPLQAELV LMTLRWLPED ITIYNDDLEG DRRRLLLRGL TQSLPEILPL LYNLLERHFG
0201: AAMSEAGMQH FDLAKQHADV VIACLNAIVA YTEWAPVPDL ARYGILSGCS FLLSSSDFRL HACEVFKLVC SRKRPSDAST AEFDSAISNL FQILTNASRE
0301: FLCRSSSSSS VIDDNDYDFA VCMCESMASL GSTNLQSISS DGGVMAVYLQ QMLGFFQHFK LGLHFEALLF WLSLMRDLLP KPKAATYPSG GGSSTGGDDS
0401: SSQVDSEKKK TLSLINDDIS SAILDVSFQR MLKKEKVPTG IALSLGPLEL WSDEFEGKGD FGPYRSKLLE LIKLTASHKP LISSTKISER VITLIKHLLA
0501: SPAPLQHVAV MDSQQLALDC IVATLFDGSN EFAGGSSEVH YALRGIFEGL LQQLLSLKWN EPELMKVHVH YLDAMGPFLK YFPDAVGSLI NKLFELLTSL
0601: PHVVKDPATS TSRAARLQIC TSFIRIAKAA EKSVLPHMKG IADTMGYLAK EGTLLRGEHN ILGEAFLVMA SSAGAQQQQE VLAWLLEPLS QQWIQPEWQN
0701: NYLSDPMGLV RLCSNTSFMW SIYHTVTFFE KALKRSGYRK SNLNTTSATT PASHPMAHHL SWMLPPLLKL LRVLHSLWSP SVFQTLPPEM RAAMTMTDAE
0801: RYSLLGEANP KLSKGVSVYA DGSFEGTKEG QAEASESDIR NWLKGIRDCG YNVLGLSTTI GETFFKCLDA NYVAMALMEN LQSMEFRHIR LFIHTFITYI
0901: VKSCPADMWE SWLGVLLHPL FIHCQQALSS AWPGLLQEGR AKVPDLFGIQ SGSDMKLEVM EEKLLRDLTR EIATLFSTMA SPGLNTGVPV LEHSGHVGRV
1001: DMSTLTDLHA FRSNSMVGFL LNHKSVALPA LQICLETFTW TDGEATTKVC YFCGVVVLLA KLTNNVELRE FVSKDMFSAV IRGLGMESNA INSPDLVNIC
1101: REIFIYLSDR DPAPRQVLLS LPCLTPNDLH AFEEATAKTS SPKEQKQLMR SLLLLGTGNN LKALAAQKSQ NVITNVTART RLPASAPETI GAGVLWDEEF
1201: VQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)