AT5G59710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VIRE2 interacting protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VIRE2 interacting protein 2 (VIP2); CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3791 Blast hits to 3038 proteins in 463 species: Archae - 1; Bacteria - 1471; Metazoa - 837; Fungi - 516; Plants - 178; Viruses - 9; Other Eukaryotes - 779 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24058157..24061736 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66237.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.62 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 614 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNLHSSLNG SASNLPDGSG RSFTASYSGQ SGAPSPSFHH TGNLQGLHNI HGNYNVGNMQ GTLTSRNSSM NSIPSAGVQQ PNGSFSSGRF ASNNLPVNLS 101: QLSHGSSHGH SGIPNRGLNV VGNPGFSSNA NGVGGSIPGI LSTSAGLSNR NSVPGMGISQ LLGNSGPRIT NSMGNMVGGG NLGRNISSGG LSIPGLSSRL 201: NLAANSGSGL NVQGQNRMMG GVLPQGSQVM SMLGNSYHTG GGPLSQNHVQ SVNNMMLSDH PNDSSLFDIN NDFPQLTSRP GSAGGTQGHL GSLRKQGLGV 301: PLVQQNQEFS IQNEDFPALP GYKGGNSEYP MDLHQKEQLH DNAMSMMHSQ NFSMGRSGGF NLGATYSSHR PQQQPQHTSS TGGLQGLGLR PLSSPNAVSS 401: IGYDQLIQQY QQHQNQSQFP VQQMSSINQF RDSEMKSTQS EADPFCLLGL LDVLNRSNPE LTSLALGIDL TTLGLDLNST GNLYKTFASP WTNEPAKSEV 501: EFTVPNCYYA TEPPPLTRAS FKRFSYELLF YTFYSMPKDE AQLYAADELY ERGWFYHKEL RVWFFRVGEP LVRAATYERG TYEYLDPNSF KTVRKEHFVI 601: KYELMEKRPS LLQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)