AT5G11030.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : aberrant lateral root formation 4 | ||||||||
| Curator Summary (TAIR10) |
alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus. | ||||||||
| Computational Description (TAIR10) |
ABERRANT LATERAL ROOT FORMATION 4 (ALF4); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, YAP/Alf4/glomulin (InterPro:IPR013877); Has 56 Blast hits to 55 proteins in 23 species: Archae - 0; Bacteria - 12; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr5:-:3490993..3495078 | ||||||||
| Molecular Weight (calculated) | 63753.40 Da | ||||||||
| IEP (calculated) | 4.35 | ||||||||
| GRAVY (calculated) | 0.09 | ||||||||
| Length | 578 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MESSIEGSSE STTVTTSPSR RVRELLALCF SSVEEAGGFQ DFESFVTELV SCLDSLYENV ALDANNELEN DVIEEVLDEI LKVLSSPQMD QDVIDALSFH 101: LPKVTSKFAD ISSRCLQLVE EIVDRFVEAC NPRDMLSILC EALDAARCYH SASTCSTPLL HGLSKVFILI QRRHYEQLKV AVPIVLNVLK DISLETDVQV 201: EDLFDKALGI ASSIRDVSSK LNNEEEAKVR CLLCLYVIQI TAIISVSIRD KAASCIPLVI QLEPFLTSCG LTHLGLITGN DTEKLMSTVA GDDDEFITSF 301: PDISLGASLL FICAKISHEV AEAANAVLGS VVDELQNNPV KRWQAYGMLK YILSSGDLLW EFKRHAIEFL LDITKGVTSS QCNDEQIDCS DYTPGIYATL 401: QVLSDIPAPH RFDVLRALVT NSRSPSMTAI LLGLVKDSMS KSSLQDTDCA AVDTHVIELV ELVLRPPQGG PPLLPDQSDA ILAALNLYRF ALLFESRECE 501: AGKERSKVGS DILSKKNLEK AYKEWLLPLR TLVSCSIAEN LKEDHGQESS LDDVGLLNPI ELVLYRCIEL VEEKLKSH |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)