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AT5G11030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : aberrant lateral root formation 4
Curator
Summary (TAIR10)
alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.
Computational
Description (TAIR10)
ABERRANT LATERAL ROOT FORMATION 4 (ALF4); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, YAP/Alf4/glomulin (InterPro:IPR013877); Has 56 Blast hits to 55 proteins in 23 species: Archae - 0; Bacteria - 12; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G11030EnsemblPlants:AT5G11030.1entrez:830970hmmpanther:PTHR15430
hmmpanther:PTHR15430:SF1Pfam:PF08568tair10-symbols:ALF4
Coordinates (TAIR10) chr5:-:3490993..3495078
Molecular Weight (calculated) 63753.40 Da
IEP (calculated) 4.35
GRAVY (calculated) 0.09
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSIEGSSE STTVTTSPSR RVRELLALCF SSVEEAGGFQ DFESFVTELV SCLDSLYENV ALDANNELEN DVIEEVLDEI LKVLSSPQMD QDVIDALSFH
101: LPKVTSKFAD ISSRCLQLVE EIVDRFVEAC NPRDMLSILC EALDAARCYH SASTCSTPLL HGLSKVFILI QRRHYEQLKV AVPIVLNVLK DISLETDVQV
201: EDLFDKALGI ASSIRDVSSK LNNEEEAKVR CLLCLYVIQI TAIISVSIRD KAASCIPLVI QLEPFLTSCG LTHLGLITGN DTEKLMSTVA GDDDEFITSF
301: PDISLGASLL FICAKISHEV AEAANAVLGS VVDELQNNPV KRWQAYGMLK YILSSGDLLW EFKRHAIEFL LDITKGVTSS QCNDEQIDCS DYTPGIYATL
401: QVLSDIPAPH RFDVLRALVT NSRSPSMTAI LLGLVKDSMS KSSLQDTDCA AVDTHVIELV ELVLRPPQGG PPLLPDQSDA ILAALNLYRF ALLFESRECE
501: AGKERSKVGS DILSKKNLEK AYKEWLLPLR TLVSCSIAEN LKEDHGQESS LDDVGLLNPI ELVLYRCIEL VEEKLKSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)