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AT4G11670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF810)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT5G06970.1); Has 193 Blast hits to 179 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2ReggNOG:ENOG410YDT1EMBL:CP002687EnsemblPlants:AT4G11670
EnsemblPlants:AT4G11670.1entrez:826772GeneID:826772Gramene:AT4G11670.1
hmmpanther:PTHR31280hmmpanther:PTHR31280:SF3InParanoid:F4JP32InterPro:IPR008528
InterPro:IPR014770InterPro:IPR014772KEGG:ath:AT4G11670OMA:FIPTIDQ
PaxDb:F4JP32Pfam:PF05664Pfscan:PS51258Pfscan:PS51259
PRIDE:F4JP32PROSITE:PS51258PROSITE:PS51259ProteinModelPortal:F4JP32
Proteomes:UP000006548RefSeq:NP_192904.5TAIR:AT4G11670UniGene:At.48846
UniProt:F4JP32
Coordinates (TAIR10) chr4:-:7044401..7052971
Molecular Weight (calculated) 126706.00 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.22
Length 1117 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSLLQRYRN DRRKLMEFLM SSGLVKELRS PSGSPTSLSP ADLDALSADY VLDCVKSGGV VDVSKGREKY NFDSSYPVTI HSESGDSYFL VSSPDLAGSP
0101: PHRMPPPPVN IEKSSNNGAD MSRHMDSSNT PSARDNYVFK EETPDIKPVK PIKIIPLGLP PLRTGLSDDD LREAAYELMI ASMLLSSFLT NSVEAYPTHR
0201: RKIEKSSRLM LSLKRKDKPH LQPQISNTHS EISSKMDTCI RRNLVQLATL RTGEQIDLPQ LALGLLVGIF KSDFPNEKLY MKWKTRQANL LEEVLCFSPS
0301: LEKNERATMR KCLATIRDSK EWDVVVSASL RIEVLSSIRQ VASKLSSLPG RCGIEEETYY WTAIYHLNIR LYEKLLFGVF DTLDEGQVIE DASSMLFHMK
0401: SIWSTLGITE NLHSAIYGWV LFQQFVCTGE PSLLGSTIQE LQKVTSAESG NPKEDLYLSH LVCSRQTIGT DIHLGLVKAI LTSVSAWCDD KLQDYHLHFG
0501: KKPRDFGMLV RLASTVGLPP ADCTRTELIK LDTLSDDVSD KIQSYVQNSI KGACARAAHF AYVKSHGERT HALALLANEL TVIAKVEINE FVPVFSKWLP
0601: ECMMISAMLL HRFYGERLTP FLEGVSSLSG DVRKVVPAAY MLQEELTQLY NCHSKSKLRK PYFHKLKNYE IEKAVKPVML DWLISQHDHI LQWTRRAFEI
0701: EEWEPLSVQQ RHAASIVEIF RIIEETVSQL FGLHLPVDIT HLQALLSLIY HSLDTYLQRV FDQLVDKKFL YPSAPPLTRF TENVMPVMKR KSLEFSEPDN
0801: KIVKKLDELT IPKLCIILNT LCYIQKQISA TEVGIRKSLT LVEASLNKRS EIETDEAEVE NSLTHSEAVD ELFATTYDSL RDTNANCITK TRDLIVLWQK
0901: YAFLFYWLIL MDEKCNAQVL DTVCSLSYED SRDMVVLSIC RSALEAYVRV LLDGGPTRAF SDSDITLMEE DLSILKEFFI ADGEGLPRSL VEQEAKQAKE
1001: ILDLYSLESD MLIQMLMTAS ELINMGVSSE QRRLEDAQTL VRVLCHKKDR NASKFLKRQY ELPMSTEYED VTLNLPALSE IVRSTSTHWS TASQNSFSSI
1101: KKKIQEATSE IRNNSGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)