AT4G04920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sensitive to freezing 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SENSITIVE TO FREEZING 6 (SFR6); Has 159 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 5; Plants - 45; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2497931..2504996 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138194.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1278 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNQQNPEEEV SLVNNSGGGG IIEAPAIVEE KEEEGLQQKQ EETIESTDPI LVVVEEKLLE KSVDGEKEDD NSSSSNMEID PVSPATVFCV KLKQPNSNLL 0101: HKMSVPELCR NFSAVAWCGK LNAIACASET CARIPSSKAN TPFWIPIHIL IPERPTECAV FNVVADSPRD SVQFIEWSPT SCPRALLIAN FHGRITIWTQ 0201: PTQGSANLVH DATSWQCEHE WRQDIAVVTK WLTGASPYRW LSSKPSSGTN AKSTFEEKFL SQSSESSARW PNFLCVCSVF SSGSVQIHWS QWPSNQGSTA 0301: PKWFSTKKGL LGAGPSGIMA ADAIITDSGA MHVAGVPIVN PSTIVVWEVT PGPGNGLQAT PKISTGSRVP PSLSSSSWTG FAPLAAYLFS WQEYLISEIK 0401: QGKKPSDQDS SDAISLSCSP VSNFSAYVSP EAAAQSAATT TWGSGVTAVA FDPTRGGSVI AVVIVEGQYM SPYDPDEGPS ITGWRVQRWE SSVQPVVLHQ 0501: IFGNPTSNFG GQVPTQTVWV SRVDMSIPPT KDFKNHQVAA AGPSVDAPKE PDSGDEKANK VVFDPFDLPS DIRTLARIVY SAHGGEIAIA FLRGGVHIFS 0601: GPTFSPVENY QINVGSAIAA PAFSPTSCCS ASVWHDAAKD CAMLKIIRVL PPALPRNQSK VDQSTWERAI AERFWWSLLV GVDWWDAVGC TQSAAEDGIV 0701: SLNSVIAVMD ADFHSLPSTQ HRQQYGPNLD RIKCRLLEGT NAQEVRAMVL DMQARLLLDM LGKGIESALV NPSALVFEPW RVDGETITGI NPEAMAVDPA 0801: LVSSIQAYVD AVLDLASHFI TRLRRYASFC RTLASHAASA GTGSNRNNVT SPTQNASSPA TPQVFPDKSL YLAVGQPTTT TTTTATTNSS GSSHVQAWMQ 0901: GAIAKISSSN DGSNSTASPI SGSPTFMPIS INTGTFPGTP AVRLIGDCHF LHRLCQLLLF CFLQRSSRFP QRNADVSSQK LQTGATSKLE EVNSAKPTPA 1001: LNRIEDAQGF RGAQLGTGVK GIDENSARTT KMGSGNAGQG YTYEEVRVLF HILMDLCKRT SGLAHPLPGS QVGSGNIQVR LHYIDGNYTV LPEVVEAALG 1101: PHMQNMPRPR GADAAGLLLR ELELHPPSEE WHRRNLFGGP GSEPEDMILT DDVSKLSNSL DLPDTNFSGI CDGYNRVHSL WPRKRRMSER DAAFGSNTSV 1201: GLGAYLGIMG SRRDVVTATW KTGLEGVWYK CIRCLRQTSA FASPGATKQP NPNERETWWT SRWVYCCPMC GGTWVRVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)