AT3G05090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1Cul4–mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LATERAL ROOT STIMULATOR 1 (LRS1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: lateral root formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Protein of unknown function DUF3337 (InterPro:IPR021772), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has 59803 Blast hits to 26869 proteins in 729 species: Archae - 50; Bacteria - 7042; Metazoa - 23770; Fungi - 14096; Plants - 7202; Viruses - 3; Other Eukaryotes - 7640 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1418573..1422723 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82201.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 753 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS 101: CSSDTTVKTW DGLSDGVCTR TLRQHSDYVT CLAVAAKNNN VVASGGLGGE VFIWDIEAAL SPVTKPNDAN EDSSSNGANG PVTSLRTVGS SNNISVQSSP 201: SHGYTPTIAK GHKESVYALA MNDTGTMLVS GGTEKVLRVW DPRTGSKSMK LRGHTDNVRV LLLDSTGRFC LSGSSDSMIR LWDLGQQRCL HTYAVHTDSV 301: WALACNPSFS HVYSGGRDQC LYLTDLATRE SVLLCTKEHP IQQLALQDNS IWVATTDSSV ERWPAEVQSP KTVFQRGGSF LAGNLSFNRA RVSLEGLNPA 401: PAYKEPSITV PGTHPIVQHE ILNNKRQILT KDAAGSVKLW DITRGVVVED YGKISFEEKK EELFEMVSIP SWFTVDTRLG CLSVHLETPQ CFSAEMYSAD 501: LKVSGRPEDD KINLARETLK GLLGHWLAKK KHKPKPQVLA SGDTLSVKDT KKNLSASKTE ESSAASDPVY PPFEFSSVSP PSIITEGSQG GPWRKKITEF 601: TGTEDEKDFP LWCLDAVLNN RLPPRENTKL SFFLHPCEGS SVQVVTLGKL SAPRILRVHK VTNYVVEKMV LDNPLDSLAI DAASVSGGQP QPLFSGNGLL 701: QSGLKPWQKL RPSIEILCNS QVLSPDMSLA TVRAYVWKKP EDLILNYRVA IAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)