AT5G51340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; Has 214 Blast hits to 140 proteins in 56 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20863594..20867171 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81884.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||
| Length | 726 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGAAVAEGL WGLADHHQKL GEIGKTIKCL EAICQSQISF LPLVEVKSRL RLAALLLRYS HNVNHAKSHL ERSLLLLKSI PSSYDLKFQN YSLLSHCYHL 101: LASFPPQRNL LVKALELASS VPQDISAYLW SCNFNSQLAN TFIIQADFPS SLSALESGFL SASHICFPEL QMFFTASMLH VHIMQWTDDY SVEKAVQRCD 201: EIWQTISSDK TDRCPGLFFY NEMLHVFYRL RLCDYKNAQH HVDRLDQAMN AHSHKMQEIQ QLLDELSSLN LSLSRYDLPS RERSALSARQ SQLQDRVNAL 301: SPSSSTVNSL EPAYFGNIDR GWTEKLLLSP SPIDGEWLPK SAIDALVHLM VVISGRPKGL FKECSKRIES GLQIIQDELI KLGITDEVRE ADLRHTAIWM 401: SRVFLMLQMQ FLENRVALEL TRSDYVEAEE ALVDMKNWFT RFPTILQASE CMIEMLRGQY SHSVGCYSEA AFHCIEATKL TESISMQASC QAFAAVSYLT 501: IGDAESSSKA LDLIGPLNGM TNSLSGVREE ASILFAYGLL LMKQRDLQEA RNRLAKGLQI AHNHMGNLQL VAQYLTLLGN LALSLHDTVQ AREILRSSLT 601: LAKKLYDIPT QLWVLSIFTA LYQQLGEKGN EMENEEFRKK KWDELQSRLA EARGSIHHIE LVAKARIELY QIDNNPQEQS LVASAQSMQG NLDIPESVGI 701: EGPSPAPSSS RLVGLDTGKR WGKRRM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)