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AT4G25880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 6
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 6 (PUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5099eggNOG:KOG1488EMBL:AF360298EMBL:AK318840
EMBL:AK319148EMBL:AL049480EMBL:AL161564EMBL:AY133866
EMBL:CP002687EnsemblPlants:AT4G25880EnsemblPlants:AT4G25880.1entrez:828694
Gene3D:1.25.10.10GeneID:828694Genevisible:Q9C5E7GO:GO:0003729
GO:GO:0006417GO:GO:0009507hmmpanther:PTHR12537hmmpanther:PTHR12537:SF74
HOGENOM:HOG000238460InParanoid:Q9C5E7InterPro:IPR001313InterPro:IPR011989
InterPro:IPR016024InterPro:IPR033133iPTMnet:Q9C5E7KEGG:ath:AT4G25880
OMA:VNTADESPaxDb:Q9C5E7Pfam:PF00806Pfam:Q9C5E7
Pfscan:PS50302Pfscan:PS50303PhylomeDB:Q9C5E7PIR:T04242
PRIDE:Q9C5E7PRO:PR:Q9C5E7PROSITE:PS50302PROSITE:PS50303
ProteinModelPortal:Q9C5E7Proteomes:UP000006548RefSeq:NP_001031720.1RefSeq:NP_567733.1
RefSeq:NP_974618.2SMART:SM00025SMR:Q9C5E7STRING:3702.AT4G25880.1
SUPFAM:SSF48371TAIR:AT4G25880tair10-symbols:APUM6tair10-symbols:PUM6
UniGene:At.21892UniGene:At.28428UniProt:Q9C5E7
Coordinates (TAIR10) chr4:+:13155518..13159078
Molecular Weight (calculated) 96110.40 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.63
Length 861 amino acids
Sequence (TAIR10)
(BLAST)
001: MATENPIRIS GSNERWSNSR KVSVPNRSGS APPNMEGSFL AVDNLLSRQG GSVYNNLMLP RYGFEEPVTT HPSSKHSLNR IPSPPIYYPT EYQFIDNRVG
101: RFRSNQGLNK VNSPIHLSQG KLSTHKEVSE DESSQQLSVN SVSDRTDGLD IRLSPGSQSL ADFRQDDTSS GQTPQHSRSN SSNGEVNTAD ESGNFSELSD
201: DVVVKDNAAS TARASIGNEK SPDESTIISK MKSTNISGPG TAKYPREPRY GQPERQPHQQ QNNATWIQGG SNMGSHGVND AVIGAGQFHY GQPYKFSGDG
301: QPVLQSSGFT PPLLYTATQT AYMTSPAHVY NMQSPAVYSP QYGYGPYTNM IPQFMPGYPS HGSVPVVVSP DFIPQLSGPS AGSVVHGGEM QYAEKLYVPP
401: GQPSFPDPMY MQYCQQSFGQ MEPLAPRNHT NAPESQKDDP KFLRQIRGPS NSNMARPGMG VNYYGIQPNM GIMVQYLPTH LGPPLSPGHV PYVEAYPGWQ
501: PQGSLEGANG PRLCNFLEEL KSGKGRRFDL SDITGHIVEF SADQHGSRFI QQKLENCKPE EKAAVFREIL PHACKLMTDV FGNYVIQKFF EYGNSTQRKE
601: LADQLMGQIV PLSLQMYGCR VIQKALDVIE PDQRVRLARE LDGQVMRCVR DQNGNHVIQK CIENIPADKV GFMLYAFRGQ VSSLSMHPYG CRVIQRLLER
701: CSHDHQCRFI TEEILESVCV LSKDQYGNYV TQHVLEKGTS EERERIGRKL SGHIVQLSLH KFASNVIEKC LEYGGRVERD LIIKEIAGPD ESYNSLLMMM
801: KDQYGNYVVQ KIFETCTADQ RLTLFSRVRM HASALKKYTY GKHIVSRLEQ PSIEENQELR R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)