AT1G56610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14096.1); Has 884 Blast hits to 868 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 884; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21212189..21213960 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61765.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFALVLIFL FGFYLFLMKS SSIFPQRPFT FLYDLWVLLL VLRFLFSLIQ ILILCLFNFR FVEMTSNNKK KKTELCDLPK CLAPHILSWL PTKTAVTVSL 101: LFMKGWWRSE MKNLSSLKFS FSDDQEEEHF VRFVDQVLRQ RGNRKLDSFS LTLNDEIDGG FVTHLVDYPL DNGVEKLKLS IYDIKGNFQL SSRVFSQATL 201: VTLKLATNRS LIWINGDDVA AAHLPCLKTL WLDDVLVADV KVFVRLLSRC PILEELVMID MKWHNWEACF VVSASLRRLK IVWTDYVEMD EYDRCPQSVL 301: FDTPNVLYLE YTDHIAGQYP LLKFSSLIEA KIRLEMIDEK EEEDEGQEVI VGDNATAFIT GITSVRKLYL YANTIQVLHH YFDPPIPEFV YLTHLTIQSD 401: KELGWDAIPE LLSKCPHLET LVLEGLFHLA TDVCGDVCPC RRNMEQAISY LVKSPVTHLE IYEGVVGKKR GEVTEDAARF GEQVRWFLMR MLHLQQVKIY 501: GQTEDSVTAL YDIATELRRL EGKASPNVQI SVLQA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)