suba logo
AT4G35140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.733
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G38480.1); Has 10094 Blast hits to 7474 proteins in 477 species: Archae - 10; Bacteria - 1944; Metazoa - 3788; Fungi - 2083; Plants - 884; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZPeggNOG:KOG1334EMBL:AY120722EMBL:BT000028
EMBL:CP002687EnsemblPlants:AT4G35140EnsemblPlants:AT4G35140.1entrez:829666
Gene3D:2.130.10.10GeneID:829666Gramene:AT4G35140.1hmmpanther:PTHR15574
hmmpanther:PTHR15574:SF41HOGENOM:HOG000243561InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986KEGG:ath:AT4G35140KO:K11804OMA:FWRREVG
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q8L862
PRO:PR:Q8L862PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
RefSeq:NP_195240.2SMART:SM00320SMR:Q8L862STRING:3702.AT4G35140.1
SUPFAM:SSF50978TAIR:AT4G35140UniGene:At.44855UniProt:Q8L862
Coordinates (TAIR10) chr4:-:16723873..16726477
Molecular Weight (calculated) 55495.00 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.50
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEKARRGRS NFNGLHHPVV DFWRREVGGI SSRNFSNRFS ASENLVLRLE IYKKLEKHKG CVNTVSFNAE GDVLISGSDD RRVVLWDWQL GNVKLSFHSG
101: HANNVFQAKF MPFSDDRTIV TCAADGMVRR ASILEGDKVE TSFLGLHQGR AHKLCIEPGN PHIFYTCGED GLVQRFDLRT EAPTELFTCR SVDPRRRNMD
201: AIQLNAIAID PRNSNLFAVG GMEEYARLYD IRRFQGEGLN GFTRAADHFC PPHLIGNEDV GITGLAFSEQ SELLVSYNDE FIYLFTPGMG LGSNPIPSSP
301: ISKSPVSKSE SSSSPKDENE HSVSLVYKGH KNCETVKGVN FFGPRSEYVV SGSDCGRIFI WRKKGGELIR VMEADRHVVN CIEPHPHIPV LASSGIESDI
401: KVWTSKAAER ATLPENIELR KRTPRGWMYR VSSPHELLAQ LFSLQNRSSS SPEREGESSS ATGRELLDLI LTFNDQSDDE NATDDDDGNS HEDFFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)