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AT1G29800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 3851 Blast hits to 3761 proteins in 321 species: Archae - 0; Bacteria - 225; Metazoa - 2022; Fungi - 664; Plants - 368; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2930eggNOG:KOG1843EMBL:BT001911EMBL:CP002684
EnsemblPlants:AT1G29800EnsemblPlants:AT1G29800.1entrez:839858ExpressionAtlas:Q84WW7
Gene3D:3.30.40.10GeneID:839858GO:GO:0046872Gramene:AT1G29800.1
hmmpanther:PTHR15629hmmpanther:PTHR15629:SF9HOGENOM:HOG000242249IntAct:Q84WW7
InterPro:IPR000306InterPro:IPR007461InterPro:IPR011011InterPro:IPR013083
InterPro:IPR017455ncoils:CoilOMA:WELDEENPfam:PF01363
Pfam:PF04366Pfscan:PS50178PhylomeDB:Q84WW7PROSITE:PS50178
Proteomes:UP000006548RefSeq:NP_174273.3SMART:SM00064SMR:Q84WW7
STRING:3702.AT1G29800.1SUPFAM:SSF57903TAIR:AT1G29800UniGene:At.40661
UniGene:At.64003UniProt:Q84WW7
Coordinates (TAIR10) chr1:+:10432736..10435177
Molecular Weight (calculated) 55765.80 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.22
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)