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AT1G78550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8641 Blast hits to 8595 proteins in 1007 species: Archae - 0; Bacteria - 1122; Metazoa - 113; Fungi - 972; Plants - 4984; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78550-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AC007260
EMBL:AF360338EMBL:AY051076EMBL:CP002684EnsemblPlants:AT1G78550
EnsemblPlants:AT1G78550.1entrez:844191Gene3D:2.60.120.330GeneID:844191
GO:GO:0005506GO:GO:0016491Gramene:AT1G78550.1gramene_pathway:1.14.11.9
gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYNhmmpanther:PTHR10209
hmmpanther:PTHR10209:SF168HOGENOM:HOG000276735InterPro:IPR002283InterPro:IPR005123
InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G78550OMA:IKHEEME
Pfam:PF03171Pfam:PF14226Pfscan:PS51471PhylomeDB:Q9SYM7
PIR:A96814PRINTS:PR00682PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_177976.1SMR:Q9SYM7SUPFAM:SSF51197TAIR:AT1G78550
UniGene:At.19032UniProt:Q9SYM7
Coordinates (TAIR10) chr1:-:29545031..29546360
Molecular Weight (calculated) 41017.40 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.32
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEGEKQWS SLIVPFVLEI VKEKNFTTIP PRYVRVDQEK TEILNDSSLS SEIPVIDMTR LCSVSAMDSE LKKLDFACQD WGFFQLVNHG IDSSFLEKLE
101: TEVQEFFNLP MKEKQKLWQR SGEFEGFGQV NIVSENQKLD WGDMFILTTE PIRSRKSHLF SKLPPPFRET LETYSSEVKS IAKILFAKMA SVLEIKHEEM
201: EDLFDDVWQS IKINYYPPCP QPDQVMGLTQ HSDAAGLTIL LQVNQVEGLQ IKKDGKWVVV KPLRDALVVN VGEILEIITN GRYRSIEHRA VVNSEKERLS
301: VAMFHSPGKE TIIRPAKSLV DRQKQCLFKS MSTQEYFDAF FTQKLNGKSH LDLMRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)