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AT2G22310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 4
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 4 (UBP4); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 3 (TAIR:AT4G39910.1); Has 8879 Blast hits to 7429 proteins in 247 species: Archae - 0; Bacteria - 4; Metazoa - 4505; Fungi - 1682; Plants - 966; Viruses - 3; Other Eukaryotes - 1719 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22310-MONOMERBioCyc:ARA:GQT-1522-MONOMEREC:3.4.19.12eggNOG:ENOG410XQ81
eggNOG:KOG1864EMBL:AC007168EMBL:AY048261EMBL:AY072625
EMBL:AY087731EMBL:CP002685EMBL:U76846EnsemblPlants:AT2G22310
EnsemblPlants:AT2G22310.1entrez:816763ExpressionAtlas:Q8LAM0GeneID:816763
Genevisible:Q8LAM0GO:GO:0005634GO:GO:0006511GO:GO:0016579
GO:GO:0036459hmmpanther:PTHR24006hmmpanther:PTHR24006:SF469HOGENOM:HOG000231498
InParanoid:Q8LAM0InterPro:IPR001394InterPro:IPR018200InterPro:IPR028889
MEROPS:C19.092PaxDb:Q8LAM0Pfam:PF00443Pfam:Q8LAM0
Pfscan:PS50235PhylomeDB:Q8LAM0PIR:B84611PRIDE:Q8LAM0
PRO:PR:Q8LAM0PROSITE:PS00972PROSITE:PS00973PROSITE:PS50235
ProteinModelPortal:Q8LAM0Proteomes:UP000006548RefSeq:NP_565532.1scanprosite:PS00972
scanprosite:PS00973SMR:Q8LAM0STRING:3702.AT2G22310.2SUPFAM:SSF54001
TAIR:AT2G22310tair10-symbols:ATUBP4tair10-symbols:UBP4UniGene:At.48505
UniGene:At.71036UniProt:Q8LAM0
Coordinates (TAIR10) chr2:-:9476733..9478825
Molecular Weight (calculated) 41848.70 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.38
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)