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AT5G52630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mitochondrial RNAediting factor 1
Curator
Summary (TAIR10)
Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes.
Computational
Description (TAIR10)
mitochondrial RNAediting factor 1 (MEF1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G04780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20585eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB025606
EMBL:CP002688EnsemblPlants:AT5G52630EnsemblPlants:AT5G52630.1entrez:835340
Gene3D:1.25.40.10GeneID:835340Genevisible:Q9LTF4GO:GO:0008270
GO:GO:0016554Gramene:AT5G52630.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF576
HOGENOM:HOG000237570InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT5G52630OMA:TIRYHSEPaxDb:Q9LTF4Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q9LTF4Pfscan:PS51375
PhylomeDB:Q9LTF4PRIDE:Q9LTF4PRO:PR:Q9LTF4PROSITE:PS51375
ProteinModelPortal:Q9LTF4Proteomes:UP000006548RefSeq:NP_200075.1SMR:Q9LTF4
STRING:3702.AT5G52630.1SUPFAM:SSF48452TAIR:AT5G52630tair10-symbols:MEF1
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.55507UniProt:Q9LTF4
Coordinates (TAIR10) chr5:+:21350375..21352141
Molecular Weight (calculated) 66153.30 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.22
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MALNSSAFFV PCHNYNQICD LLLSSARTRS TIKGLQLHGY VVKSGLSLIP LVANNLINFY SKSQLPFDSR RAFEDSPQKS STTWSSIISC FAQNELPWMS
101: LEFLKKMMAG NLRPDDHVLP SATKSCAILS RCDIGRSVHC LSMKTGYDAD VFVGSSLVDM YAKCGEIVYA RKMFDEMPQR NVVTWSGMMY GYAQMGENEE
201: ALWLFKEALF ENLAVNDYSF SSVISVCANS TLLELGRQIH GLSIKSSFDS SSFVGSSLVS LYSKCGVPEG AYQVFNEVPV KNLGIWNAML KAYAQHSHTQ
301: KVIELFKRMK LSGMKPNFIT FLNVLNACSH AGLVDEGRYY FDQMKESRIE PTDKHYASLV DMLGRAGRLQ EALEVITNMP IDPTESVWGA LLTSCTVHKN
401: TELAAFAADK VFELGPVSSG MHISLSNAYA ADGRFEDAAK ARKLLRDRGE KKETGLSWVE ERNKVHTFAA GERRHEKSKE IYEKLAELGE EMEKAGYIAD
501: TSYVLREVDG DEKNQTIRYH SERLAIAFGL ITFPADRPIR VMKNLRVCGD CHNAIKFMSV CTRRVIIVRD NNRFHRFEDG KCSCNDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)