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AT1G71060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 34236 Blast hits to 11484 proteins in 290 species: Archae - 3; Bacteria - 45; Metazoa - 348; Fungi - 482; Plants - 32361; Viruses - 0; Other Eukaryotes - 997 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC016972EMBL:CP002684
EnsemblPlants:AT1G71060EnsemblPlants:AT1G71060.1entrez:843446Gene3D:1.25.40.10
GeneID:843446Genevisible:Q9C9A2GO:GO:0005739Gramene:AT1G71060.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF261HOGENOM:HOG000237897InParanoid:Q9C9A2
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9C9A2KEGG:ath:AT1G71060
OMA:IMVRMFCPaxDb:Q9C9A2Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:Q9C9A2Pfscan:PS51375PhylomeDB:Q9C9A2
PIR:A96735PRIDE:Q9C9A2PRO:PR:Q9C9A2PROSITE:PS51375
ProteinModelPortal:Q9C9A2Proteomes:UP000006548RefSeq:NP_177262.1SMR:Q9C9A2
STRING:3702.AT1G71060.1SUPFAM:SSF81901TAIR:AT1G71060TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.66129UniProt:Q9C9A2
Coordinates (TAIR10) chr1:-:26805651..26807183
Molecular Weight (calculated) 58527.90 Da
IEP (calculated) 9.28
GRAVY (calculated) -0.38
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFSRFFRVT GVNLSRRVYS RISSSSSPSL ESIPWIHKAS NFTLYGSFHA SSVETQVSAN DASQDAERIC KILTKFTDSK VETLLNEASV KLSPALIEEV
101: LKKLSNAGVL ALSVFKWAEN QKGFKHTTSN YNALIESLGK IKQFKLIWSL VDDMKAKKLL SKETFALISR RYARARKVKE AIGAFHKMEE FGFKMESSDF
201: NRMLDTLSKS RNVGDAQKVF DKMKKKRFEP DIKSYTILLE GWGQELNLLR VDEVNREMKD EGFEPDVVAY GIIINAHCKA KKYEEAIRFF NEMEQRNCKP
301: SPHIFCSLIN GLGSEKKLND ALEFFERSKS SGFPLEAPTY NALVGAYCWS QRMEDAYKTV DEMRLKGVGP NARTYDIILH HLIRMQRSKE AYEVYQTMSC
401: EPTVSTYEIM VRMFCNKERL DMAIKIWDEM KGKGVLPGMH MFSSLITALC HENKLDEACE YFNEMLDVGI RPPGHMFSRL KQTLLDEGRK DKVTDLVVKM
501: DRLRKTQLVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)