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AT2G32630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 59391 Blast hits to 14965 proteins in 315 species: Archae - 4; Bacteria - 81; Metazoa - 864; Fungi - 1178; Plants - 55320; Viruses - 0; Other Eukaryotes - 1944 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004681EMBL:CP002685
EnsemblPlants:AT2G32630EnsemblPlants:AT2G32630.1entrez:817823Gene3D:1.25.40.10
GeneID:817823Genevisible:Q8S8P6Gramene:AT2G32630.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF418HOGENOM:HOG000242512InParanoid:Q8S8P6InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT2G32630OMA:YTLLMELPaxDb:Q8S8P6
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfam:Q8S8P6Pfscan:PS51375PhylomeDB:Q8S8P6PIR:T02562
PRIDE:Q8S8P6PRO:PR:Q8S8P6PROSITE:PS51375ProteinModelPortal:Q8S8P6
Proteomes:UP000006548RefSeq:NP_180822.1SMR:Q8S8P6STRING:3702.AT2G32630.1
SUPFAM:SSF81901TAIR:AT2G32630TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.66292UniProt:Q8S8P6
Coordinates (TAIR10) chr2:+:13844834..13846708
Molecular Weight (calculated) 70898.90 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.23
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)